Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
dispersion
•
reset
2
votes
2
replies
1.6k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
9 months ago
Linton
• 0
0
votes
3
replies
970
views
Dispersion outliers genes
Dispersion
DESeq2
17 months ago
raya.fai
▴ 60
1
vote
1
reply
1.0k
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 2.2 years ago by
Michael Love
42k • written 2.2 years ago by
Julia
▴ 10
1
vote
2
replies
1.5k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
2.9 years ago • updated 2.8 years ago
m.glymenaki
• 0
4
votes
5
replies
1.4k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
3.3 years ago
Manal
• 0
0
votes
0
replies
651
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.5 years ago by
Michael Love
42k • written 3.5 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
3.4k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 3.7 years ago by
Michael Love
42k • written 4.0 years ago by
Kelen
▴ 10
0
votes
2
replies
949
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.6 years ago by
Gordon Smyth
51k • written 4.7 years ago by
Ruben.wauters
• 0
3
votes
3
replies
2.0k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 5.3 years ago by
onlychainsaw2019
• 0 • written 5.8 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
1.8k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.5 years ago • updated 5.4 years ago
fiona.dick91
▴ 60
0
votes
5
replies
2.8k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
5.7 years ago
eva-m.petit
• 0
0
votes
4
replies
1.6k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.5k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 6.3 years ago by
Ryan C. Thompson
★ 7.9k • written 6.3 years ago by
Mr.RB
▴ 20
8
votes
12
replies
10k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
Mr.RB
▴ 20
0
votes
13
replies
6.3k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.5 years ago
Frederik Ziebell
▴ 30
0
votes
11
replies
2.4k
views
Strange dispersion plot
deseq2
dispersion
6.6 years ago
Moose123
• 0
5
votes
7
replies
7.4k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 7.0 years ago by
Bernd Klaus
▴ 610 • written 7.0 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.1k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 8.0 years ago by
Ryan C. Thompson
★ 7.9k • written 8.0 years ago by
nancyjwahl7
• 0
4
votes
3
replies
1.8k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 8.3 years ago by
Michael Love
42k • written 8.3 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.5k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.3k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 8.3 years ago by
Gordon Smyth
51k • written 8.3 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.3k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 8.7 years ago by
Michael Love
42k • written 8.7 years ago by
hans
• 0
3
votes
2
replies
4.2k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
9.2 years ago
meeta.mistry
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Comment: How to reverse complement some elements of a DNAStringSet
by
Christine Jones
• 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts?
by
Katherine
• 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet
by
James W. MacDonald
67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts?
by
James W. MacDonald
67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind
by
Ou, Jianhong
★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Votes
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
Awards
• All
Scholar
to
James W. MacDonald
67k
Popular Question
to
shepherl
4.0k
Scholar
to
Gordon Smyth
51k
Popular Question
to
bioinformaticssrm2011
• 0
Popular Question
to
sukeshinik5
▴ 20
Locations
• All
France,
14 minutes ago
United States,
1 hour ago
France,
2 hours ago
United States,
2 hours ago
Iran,
2 hours ago
Traffic: 578 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6