Showing : StatisticalMethod • reset
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 4 months ago by ★ 1.4k • written 4 months ago by • 0
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
4 months ago pierre.devillemereuil • 0
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3
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 5 months ago by ★ 4.5k • written 5 months ago by • 0
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
9 months ago Linton • 0
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
9 months ago Sabiha ▴ 20
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
10 months ago Manthos • 0
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 11 months ago by 51k • written 11 months ago by ▴ 10
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 15 months ago by 51k • written 15 months ago by ▴ 10
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 18 months ago by ★ 4.5k • written 19 months ago by • 0
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921
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
19 months ago Loïc • 0
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
20 months ago rcreswell01 • 0
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 20 months ago by 51k • written 20 months ago by ▴ 10
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 22 months ago by 42k • written 23 months ago by ▴ 10
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767
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
23 months ago Laurent Gatto 1.6k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.0 years ago walkerrh95 • 0
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.1 years ago gaow • 0
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663
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
2.6 years ago dong ▴ 10
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3
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4.2k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.5 years ago by • 0 • written 2.7 years ago by • 0
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4
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1.2k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.7 years ago Giovanni • 0
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.1 years ago Field -Ye • 0
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1.6k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.3 years ago Aneesha • 0
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.4 years ago by 42k • written 3.4 years ago by • 0
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.6 years ago by 51k • written 3.6 years ago by ▴ 10
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.8 years ago jol.espinoz ▴ 40
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833
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p adjusted value not available
StatisticalMethod DESeq2
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
26 results • Page 1 of 1
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Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts? by Katherine • 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet by James W. MacDonald 67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts? by James W. MacDonald 67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind by Ou, Jianhong ★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Votes
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
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Scholar to James W. MacDonald 67k
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