Bioconductor Installation

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Installation Bioconductor

3 months ago shepherl 4.0k

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 21 months ago by James W. MacDonald 67k • written 21 months ago by hong • 0

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754

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BiocManager installation GEOquery

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by surinder.chd90 • 0

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installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb

2.2 years ago elmfinds • 0

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rtracklayer GenomicRanges Installation

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by Johanna • 0

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GRanges packages installation

updated 2.4 years ago by shepherl 4.0k • written 2.4 years ago by Eli • 0

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package symlinks directories installation Dropbox

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by jose ▴ 10

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packages installation Bioconductor updating

updated 2.5 years ago by Marcel Ramos 700 • written 2.5 years ago by jose ▴ 10

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Installation

updated 2.6 years ago by James W. MacDonald 67k • written 2.6 years ago by dmahoney • 0

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apple m1 installation silicon

updated 2.7 years ago by Gordon Smyth 51k • written 3.2 years ago by Brian ▴ 90

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DESeq2 Problem installation with

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.2 years ago by Nahid • 0

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hdf5r installation

updated 3.2 years ago by Hervé Pagès 16k • written 3.2 years ago by snp31 • 0

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Installation

updated 3.2 years ago by James W. MacDonald 67k • written 3.2 years ago by gray • 0

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macos installation

updated 3.3 years ago by Kevin Blighe ★ 4.0k • written 3.3 years ago by Joe ▴ 10

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scran installation

3.6 years ago TJ • 0

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installation time machine mran rspm

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by Michael Steinbaugh ▴ 90

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deseq2 bioconductor windows xml installation

updated 4.1 years ago by Michael Love 42k • written 4.1 years ago by sarah3 • 0

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ensembldb package installation BiocManager

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by dylangagler • 0

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Installation Packages Missing

updated 4.1 years ago by Laurent Gatto 1.6k • written 4.4 years ago by sreedta8 ▴ 10

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bioconductor installation proxy BiocManager

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by chen • 0

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DelayedArray warning installation

updated 4.3 years ago by Hervé Pagès 16k • written 4.3 years ago by inzirio ▴ 10

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Installation

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by terrylthomas2804 • 0

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installation permission denied RTCGAToolbox TCGAbiolinks

4.4 years ago julia.tutzauer • 0

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R installation packages annotatr biocmanager

4.4 years ago dakarai_esgdaille ▴ 10

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software error HTSeq installation

updated 4.5 years ago by Martin Morgan 25k • written 4.6 years ago by eric33150 • 0

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packages installation GenomeGraphs

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by alex • 0

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software error installation

updated 4.7 years ago by James W. MacDonald 67k • written 4.7 years ago by GENOMIC_region • 0

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goseq installation

4.7 years ago gdalsky ▴ 40

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newpackage vignette installation

updated 4.9 years ago by shepherl 4.0k • written 4.9 years ago by Krutik Patel ▴ 10

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8.5k

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Rhtslib installation error zlib

updated 5.0 years ago by leoadam014 • 0 • written 5.9 years ago by boboshaq • 0

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1.9k

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Genesis Installation

updated 5.1 years ago by Mike Smith ★ 6.5k • written 5.1 years ago by winstondunnmd ▴ 10

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1.8k

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flowCore Installation dependency

updated 5.3 years ago by Jake Wagner ▴ 310 • written 5.3 years ago by Robert Baer ▴ 70

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1.1k

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ChemmineOB Linux Installation

5.5 years ago jandrosavich • 0

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1.1k

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installation

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by thatwasfunny • 0

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1.1k

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installation biocmanager

updated 5.9 years ago by shepherl 4.0k • written 5.9 years ago by Michael Steinbaugh ▴ 90

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1.6k

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biocmanager installation

6.0 years ago Kyle Johnsen ▴ 30

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9.1k

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biocinstaller custom library path installation package installation

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by ariel ▴ 20

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1.2k

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delayedarray bug installation

updated 6.1 years ago by Martin Morgan 25k • written 6.2 years ago by simon.andrews • 0

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1.8k

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ChAMP software error installation

6.2 years ago chxp • 0

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installation minfi bumphunter

updated 6.3 years ago by Peter Hickey ▴ 740 • written 6.3 years ago by muellerf • 0

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installation

6.4 years ago xinfu.xia • 0

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rhstlib installation compilation error

6.4 years ago Ryan C. Thompson ★ 7.9k

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1.8k

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installation phyloseq

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by layeb • 0

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3.5k

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bioconductor biocinstaller installation conda

6.6 years ago jol.espinoz ▴ 40

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1.8k

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bioclite package installation installation install

updated 6.6 years ago by Mike Smith ★ 6.5k • written 6.6 years ago by cristian ▴ 10

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3.0k

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ubuntu installation

updated 6.7 years ago by Martin Morgan 25k • written 6.7 years ago by Deleted ▴ 70

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2.7k

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goseq installation

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by philipp.voss • 0

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1.3k

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installation CardinalWorkflows Imaging mass spectrometry Cardinal

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by xander.spotbeen • 0

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biocinstaller root installation installation problem

6.9 years ago charles.tilford ▴ 10

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phyloseq installation ade4 macos

6.9 years ago sprague • 0

50 results • Page 1 of 1

Recent ...

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Answer: KEGGgraph result difference by alex.pico ▴ 20

I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…

Answer: In the sesame package, what does the estimate output mean from testEnrichment() by James W. MacDonald 67k

It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …

Comment: WGCNA Choosing soft threshold power below R^2 0.8 by Lluís Revilla Sancho ▴ 730

This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …

Comment: WARNING: No Bioconductor dependencies detected. by katja.danielzik • 0

Hi Laurent, thank you for your answer! Yes, I will use the Summarized Experiment class in package. Best, Katja

Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by venusian.martin • 0

EDIT: I managed to find the documentation where `sublong` is noted :) When I use sublong with the same inputs as in my OP, I get this err…

Votes

C: Usability of ERCC spike-ins in standard RNAseq experiments

A: Usability of ERCC spike-ins in standard RNAseq experiments

A: Using the ERCC spike as a normalization factor for a custom algorithm

Answer: Cannabis and KEGGgraph

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Popular Question to Robert Castelo ★ 3.4k