Bioconductor EMBL

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EMBL Heidelberg AI Conference

12 months ago Wolfgang Huber ★ 13k

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nanopore job EMBL IIT Job

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EMBL Job

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ExpressionAtlas EMBL TPM

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EMBL services workflows training Job

9.7 years ago Wolfgang Huber ★ 13k

6 results • Page 1 of 1

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Answer: Package needs internet access by James W. MacDonald 67k

It's going to need internet access. When you switch to NCBI seqlevels, you are calling this function ``` .fetch_chrom_sizes_from_UCSC_d…

Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li by Gordon Smyth 51k

The first coefficient in your linear model appears to be an intercept term. In this context, you should not be using `method="global"` beca…

Comment: Package needs internet access by firestar ▴ 20

Updated with more code.

Comment: Package needs internet access by James W. MacDonald 67k

It's not clear to me why (or that) `seqlevelsStyle` should be called on a `BSgenome` object. You will need to provide more code that preced…

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela by James W. MacDonald 67k

The 'voom transformed counts' are just logCPM with a prior count of 0.5. The 'magic' of limma-voom is the weights that are computed and the…

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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

Dotplot from enricher outputting very few genes

Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

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