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748

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HELP Data

updated 2.2 years ago by Guido Hooiveld ★ 4.1k • written 2.2 years ago by mcclurejenniferc • 0

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641

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BAM Segmentation CINdex VCF Data

2.3 years ago raven1306 • 0

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2.6k

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ExpressionSet Assay NanoString Error Data

updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by junli1988 • 0

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707

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Cytometry R Data

2.4 years ago hamiltond ▴ 10

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1.0k

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data immunology software vaccinology

3.2 years ago Daniel • 0

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1.4k

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TCGAbiolinks data normalize l

updated 3.3 years ago by Kevin Blighe ★ 4.0k • written 3.3 years ago by DANIELA • 0

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2.2k

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data package submission BiocCheck

5.3 years ago j.flesch ▴ 10

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1.1k

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package data

6.2 years ago divyswar01 • 0

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809

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cellGrowth data

6.6 years ago muitalegal888 • 0

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1.4k

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omiccircos bug hg19 hg18 data

7.5 years ago matthew.bashton • 0

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1.3k

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transform flow cytometry data

updated 7.9 years ago by SamGG ▴ 350 • written 7.9 years ago by cr • 0

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1.4k

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rna-seq data

updated 7.9 years ago by Gordon Smyth 51k • written 7.9 years ago by bioinformatics ▴ 20

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1.7k

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edger data analysis

9.4 years ago Pau Marc Muñoz Torres ▴ 20

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1.4k

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data

9.5 years ago Bogdan ▴ 670

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3.4k

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biseq fdr data results

9.6 years ago • updated 9.5 years ago mnaymik ▴ 10

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2.2k

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flowCore flowjo data

updated 10.0 years ago by Greg Finak ▴ 150 • written 10.0 years ago by AJC ▴ 10

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3.3k

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limma export log2 data agilent

updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by Jahn Davik ▴ 110

17 results • Page 1 of 1

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Comment: limma technical repeat correction by Gordon Smyth 51k

I have never analysed SomaScan data, so I cannot make any specific recommendations about how to analyse such data. I have however analysed …

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela by Gordon Smyth 51k

voom() does not transform the data to be homoscedastic. Quite the opposite, it computes precision weights that reflect the mean-variance tr…

Answer: Package needs internet access by James W. MacDonald 67k

It's going to need internet access. When you switch to NCBI seqlevels, you are calling this function ``` .fetch_chrom_sizes_from_UCSC_d…

Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li by Gordon Smyth 51k

The first coefficient in your linear model appears to be an intercept term. In this context, you should not be using `method="global"` beca…

Comment: Package needs internet access by firestar ▴ 20

Updated with more code.

Votes

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

Dotplot from enricher outputting very few genes

Answer: [How to construct a model.matrix ]

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