Bioconductor Bioc

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Asia BioCAsia Conferences Events BioC

written 2.0 years ago by Peter Hickey ▴ 740

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BioCor bioc BiocVersion

12 months ago feifan • 0

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bioc Bioconductor

updated 3.1 years ago by Hervé Pagès 16k • written 3.1 years ago by cannin ▴ 20

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R bioc

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by pawan12394 • 0

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BioC 2018 Course

7.3 years ago s.munster ▴ 40

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Bioc package installation rforproteomics

updated 8.7 years ago by Laurent Gatto 1.6k • written 8.7 years ago by sarahgrogan • 0

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Comment: limma technical repeat correction by Gordon Smyth 51k

I have never analysed SomaScan data, so I cannot make any specific recommendations about how to analyse such data. I have however analysed …

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela by Gordon Smyth 51k

voom() does not transform the data to be homoscedastic. Quite the opposite, it computes precision weights that reflect the mean-variance tr…

Answer: Package needs internet access by James W. MacDonald 67k

It's going to need internet access. When you switch to NCBI seqlevels, you are calling this function ``` .fetch_chrom_sizes_from_UCSC_d…

Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li by Gordon Smyth 51k

The first coefficient in your linear model appears to be an intercept term. In this context, you should not be using `method="global"` beca…

Comment: Package needs internet access by firestar ▴ 20

Updated with more code.

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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

Dotplot from enricher outputting very few genes

Answer: [How to construct a model.matrix ]

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