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511 results • Page 1 of 11
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Answer: KEGGgraph result difference by alex.pico ▴ 20
I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…
Answer: In the sesame package, what does the estimate output mean from testEnrichment() by James W. MacDonald 67k
It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …
Comment: WGCNA Choosing soft threshold power below R^2 0.8 by Lluís Revilla Sancho ▴ 730
This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …
Comment: WARNING: No Bioconductor dependencies detected. by katja.danielzik • 0
Hi Laurent, thank you for your answer! Yes, I will use the Summarized Experiment class in package. Best, Katja
Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by venusian.martin • 0
EDIT: I managed to find the documentation where `sublong` is noted :) When I use sublong with the same inputs as in my OP, I get this err…
Votes
C: Usability of ERCC spike-ins in standard RNAseq experiments
A: Usability of ERCC spike-ins in standard RNAseq experiments
A: Using the ERCC spike as a normalization factor for a custom algorithm
Answer: Cannabis and KEGGgraph
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