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23 months ago hdawson • 0
532 results • Page 1 of 11
Recent ...
Replies
Comment: When running contrasts, does it use normalized read counts? by Katherine • 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet by James W. MacDonald 67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts? by James W. MacDonald 67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind by Ou, Jianhong ★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Comment: featureCounts fails to load annotation file by yasmin.hilliam • 0
Hi, I clearly just needed to step away from the computer screen for the weekend. Your line of code made me realize that I actually just ha…
Votes
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
Answer: Biostrings: Error writing long reads (>200kbps) with writeQualityScaledXStringSe
What should be the normalization protocol for RNA seq data for WGCNA?
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