3decision

3decision

Discngine
LigPlot+

LigPlot+

EMBL-EBI
+

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About

3decision® is a cloud-based protein structure repository designed for comprehensive structural data management and advanced analytics, enabling small molecule and biologics discovery teams to accelerate structure-based drug design. It centralizes and standardizes experimental and in-silico protein structures from public sources like RCSB PDB and AlphaFoldDB, as well as proprietary data, supporting formats like PDBx/mmCIF and ModelCIF. This ensures easy access to X-Ray, NMR, cryo-EM, and modeled structures, fostering collaboration and enhancing research efforts. Beyond storage, 3decision® enriches entries with metadata and sequence information, including protein-ligand interactions, antibody annotations, and binding site details. Advanced analytical tools identify druggable sites, assess off-target risks, and enable binding site comparisons, transforming vast structural data into actionable knowledge. Its cloud-based platform facilitates collaboration among research teams.

About

LigPlot+ is a successor to our original LIGPLOT program for the automatic generation of 2D ligand-protein interaction diagrams. It is run from an intuitive java interface that allows on-screen editing of the plots via mouse click-and-drag operations. In addition to the new interface, the program includes several major enhancements over the old version. When two or more ligand-protein complexes are sufficiently similar, LigPlot+ can automatically display their interaction diagrams either superposed or side by side. Any conserved interactions are highlighted. The LigPlot+ suite also now includes an update of the original DIMPLOT program for plotting protein-protein or domain-domain interactions. Users can flexibly select the interface of interest and DIMPLOT will then generate a diagram showing the residue-residue interactions across the interface. To assist in interpretation, the residues in one of the interfaces can be optionally displayed in sequence order.

About

The core of extensible programming is defining functions. Python allows mandatory and optional arguments, keyword arguments, and even arbitrary argument lists. Whether you're new to programming or an experienced developer, it's easy to learn and use Python. Python can be easy to pick up whether you're a first-time programmer or you're experienced with other languages. The following pages are a useful first step to get on your way to writing programs with Python! The community hosts conferences and meetups to collaborate on code, and much more. Python's documentation will help you along the way, and the mailing lists will keep you in touch. The Python Package Index (PyPI) hosts thousands of third-party modules for Python. Both Python's standard library and the community-contributed modules allow for endless possibilities.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Structure-based drug discovery research teams, Medicinal chemists, Structural biologists, computational chemists, Pharmaceutical, Biotech, CRO

Audience

Labs and researchers interested in a solution to create and visualize ligand-protein interaction diagrams

Audience

Developers interested in a beautiful but advanced programming language

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

API

Offers API

Screenshots and Videos

No images available

Screenshots and Videos

Screenshots and Videos

Pricing

No information available.
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Pricing

Free
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Reviews/Ratings

Overall 5.0 / 5
ease 5.0 / 5
features 5.0 / 5
design 5.0 / 5
support 5.0 / 5

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Discngine
Founded: 2004
France
www.discngine.com

Company Information

EMBL-EBI
United Kingdom
www.ebi.ac.uk/thornton-srv/software/LigPlus/

Company Information

Python
Founded: 1991
www.python.org

Alternatives

SILCS

SILCS

SilcsBio

Alternatives

SILCS

SILCS

SilcsBio

Alternatives

Aurora Drug Discovery

Aurora Drug Discovery

Aurora Fine Chemicals
3decision

3decision

Discngine
BioNeMo

BioNeMo

NVIDIA
Aurora Drug Discovery

Aurora Drug Discovery

Aurora Fine Chemicals
AlphaFold

AlphaFold

DeepMind
BioNeMo

BioNeMo

NVIDIA

Categories

Categories

Categories

Integrations

302.AI
Apolo
Code::Blocks
Codey
DataChain
Ellipsis
GPT-4o
GPT-4o mini
IntelliSense
JetBrains Fleet
Lapce
Lexalytics
Llama 4 Behemoth
Neurotechnology AI SDK
PandaAI
RouteLLM
Syhunt Hybrid
Undrstnd
Visplore
devlo

Integrations

302.AI
Apolo
Code::Blocks
Codey
DataChain
Ellipsis
GPT-4o
GPT-4o mini
IntelliSense
JetBrains Fleet
Lapce
Lexalytics
Llama 4 Behemoth
Neurotechnology AI SDK
PandaAI
RouteLLM
Syhunt Hybrid
Undrstnd
Visplore
devlo

Integrations

302.AI
Apolo
Code::Blocks
Codey
DataChain
Ellipsis
GPT-4o
GPT-4o mini
IntelliSense
JetBrains Fleet
Lapce
Lexalytics
Llama 4 Behemoth
Neurotechnology AI SDK
PandaAI
RouteLLM
Syhunt Hybrid
Undrstnd
Visplore
devlo
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