Activity for Xolotl Plasma-Surface Interactions
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Sophie Blondel modified a wiki page
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Christopher Ulmer committed [r1397]
Configured for bulk ion irradiation with implantation and full output at last timestep. CJU20180305
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Missing file from last.
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Changed defect generation functions, could not polynomial fit bulk ion irradiation data successfully. Changed AlloyFitFluxHandler.h and added AlloySRIMData.h. Still in production and testing. CJU20180216
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Added option and function to output full solution vector in 1D case. cju20180208
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February 2018 Morning Status Meetings
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Updating only main.cpp with the addition of the Fe network. SB 20180201
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Updating Monitor0D.cpp that was removed in last commit. SB 20180201
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Updating only the xolotlSolver folder with the addition of the Fe network. SB 20180201
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Updating only the xolotlFactory folder with the addition of the Fe network. SB 20180201
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Updating IDiffusionHandler.h that was removed in last commit. SB 20180201
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Updating only the xolotlCore folder with the addition of the Fe network. SB 20180201
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Updating DummyTrapMutationHandlerTester that was blank in last commit. SB 20180201
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Updating DummyTrapMutationHandlerTester that was removed in last commit. SB 20180201
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Removing DummyTrapMutationHandlerTester. SB 20180201
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Updating only the tests folder with the addition of the Fe network. SB 20180201
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Removing a file that apparently caused corruption. SB 20180201
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Creating a new Fe branch because the iron branch is corrupted. SB 20180201
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Adding Fe source files to monitor1D. SB 20180201
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Adding the Fe reaction network from Aaron's test problem with analytical methods for the grouping. Adding Phil Roth optimizations in the PSI network. Updating the tests. Tests for Fe are still missing, and preprocessor needs to be updated. SB 20180201
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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Parameter File
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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Adding FeFitFluxHandler and associated test. Updating the other flux handlers. SB 20180122
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Philip Roth committed [r1378]
Added some temporary debugging support for diagnosis of collapse bug.
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Creating a new branch to implement an iron material case with optimizations from the bubble test branches. SB 20180122
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January 2018 Morning Status Meetings
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Updating the find cmake support from Jed Brown and fix from the collapse branch. SB 20180118
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Remove some repeated heap allocations for constants.
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Fixed problem with our use of PETSc CMake module.
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Added option for specifying/printing RNG seed.
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Updated Jed Brown Find*.cmake modules missed with earlier commit.
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Update PETSC cmake support from Jed Brown.
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Fix compile bug when using clang and OpenMPI.
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Making branch to study collapse bug without affecting trunk.
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January 2018 Morning Status Meetings
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Reverting to without Pade approximation and fixing the computation of moments. SB 20180111
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New branch on the bubble test case with grouping and Pade implementation. SB 20180110
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New branch on the bubble test case with grouping and Pade implementation. SB 20180110
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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January 2018 Morning Status Meetings
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Parameter File
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Parameter File
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Better tolerance for unsupported PAPI hardware counters.
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Fixed configure ordering problems exposed on summitdev.
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Creating new branch for optimization work on analytical branch.
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Renaming incorrectly-based branch. Will delete later.
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Changed top-level cmake script to support summitdev.
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Removed some extraneous output.
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Better tolerate missing PAPI counters.
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Added cmake support for configuring for use of Kokkos.
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Adding 2 parameter files to run a standard NE and PSI2 case with Xolotl current revision. SB 20171212
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Changing the xenon migration parameters to reproduce test 3 of the test cases. SB 20171212
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December 2017 Morning Status Meetings
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Reverting the bursting in 1D to a monitor because only one post step method can be set with PETSc at a time. SB 20171211
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The building of the preprocessor is optional and happens only if Java is found. Fixed the Petsc method that was deprecated. SB 20171211
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December 2017 Morning Status Meetings
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Branching for optimization work based on analytical supercluster branch.
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December 2017 Morning Status Meetings
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Adding a PETSc option to check when the dt goes under a threshold and stop the solver. Writes the reason for stopping in a file. SB 20171205
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Adding the depth of the fit as an argument in the tridyn flux handler when reading the input file. SB 20171205
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December 2017 Morning Status Meetings
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Fixing the printing of the surface and writing the flux vectors at each initialization for TRIDYN flux. SB 20171204
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December 2017 Morning Status Meetings
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December 2017 Morning Status Meetings
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First implementation of Pade approximation on top of the moment grouping scheme but for now it is commented. SB 20171130
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November 2017 Morning Status Meetings
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November 2017 Morning Status Meetings
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November 2017 Morning Status Meetings
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Fixing the computation of the moments when the grouping grid is updated. SB 20171127
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November 2017 Morning Status Meetings
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November 2017 Morning Status Meetings
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First implementation of a dynamic solver that extends and changes the grouping scheme at each loop. Not optimized at all. SB 20171120
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November 2017 Morning Status Meetings
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Added missing files from last commit. CJU20171117.
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Reworked reaction network declaration to be more straightforward. CJU20171117.
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November 2017 Morning Status Meetings
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Modified the grouping so that the biggest cluster is grouped on its own to get similar results as no grouping. Updated the corresponding tests. SB 20171115
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November 2017 Morning Status Meetings
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November 2017 Morning Status Meetings
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November 2017 Morning Status Meetings
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Changed the boundary conditions for free surface that were causing PETSc to behave strangely after 20s of simulation. Updated the new boundary conditions in 2D and 3D. SB 20171101
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November 2017 Morning Status Meetings
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October 2017 Morning Status Meetings
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October 2017 Morning Status Meetings
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October 2017 Morning Status Meetings
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October 2017 Morning Status Meetings
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