@comment{This file has been generated by Pybliographer}
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@String{ pub-aw-longman = "Ad{\-d}i{\-s}on-Wes{\-l}ey Longman"}
@String{ pub-world-sci = "World Scientific Publishing Co."}
@String{ pub-mt:adr = "M\&T Publishing, Inc., 501 Galveston Drive, Redwood City, CA 94063, USA"}
@String{ pub-phptr = "P T R Pren{\-}tice-Hall"}
@String{ pub-apress = "Apress"}
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@String{ pub-sams:adr = "Indianapolis, IN, USA"}
@String{ j-comput-sci-eng = "Computing in Science and Engineering"}
@String{ j-x-j = "The {X} Journal: Computing Technology with the {X Window System}"}
@String{ j-j-res-natl-inst-stand-technol = "Journal of research of the National Institute of Standards and Technology"}
@String{ j-exe = ".EXE: the software developers' magazine"}
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@String{ j-linux-j = "Linux journal"}
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@String{ pub-world-sci:adr = "Singapore; Philadelphia, PA, USA; River Edge, NJ, USA"}
@String{ pub-phptr:adr = "Englewood Cliffs, NJ 07632, USA"}
@String{ j-jeric = "ACM Journal on Educational Resources in Computing (JERIC)"}
@String{ j-ddj = "Dr. Dobb's Journal of Software Tools"}
@String{ pub-ieee:adr = "1109 Spring Street, Suite 300, Silver Spring, MD 20910, USA"}
@String{ pub-cwi:adr = "P. O. Box 4079, 1009 AB Amsterdam, The Netherlands"}
@InProceedings{Beazley1997,
Author = "D. M. Beazley and P. S. Lomdahl",
Title = "Extensible Message Passing Application Development and
Debugging with {Python}",
Pages = "650--655",
acknowledgement = ack-nhfb,
bibdate = "Thu May 21 19:02:04 MDT 1998",
classification = "C5220P (Parallel architecture)C5440 (Multiprocessing
systems); C6110P (Parallel programming); C6115
(Programming support); C6140D (High level languages);
C6150C (Compilers, interpreters and other processors);
C6150G (Diagnostic, testing, debugging and evaluating
systems); C6150N (Distributed systems software)",
conftitle = "Proceedings 11th International Parallel Processing
Symposium",
corpsource = "Dept. of Comput. Sci., Utah Univ., Salt Lake City, UT,
USA",
crossref = "IEEE:1997:PIP",
keywords = "application specific debugging; CM-5; Cray T3D;
extensible message passing application debugging;
extensible message passing application development;
interpreted object oriented scripting language;
large-scale message passing applications; message
passing; message passing program writing; molecular
dynamics application; MPI; multiprocessing systems;
object-oriented languages; parallel machines; parallel
programming; program debugging; program interpreters;
Python parallelisation; rapid prototyping; software
prototyping; Sun multiprocessor servers",
sponsororg = "IEEE Comput. Soc. Tech. Committee on Parallel
Process.; ACM SIGARCH; Eur. Assoc. Theor. Comput. Sci.
(EATCS); Swiss Special Interest Group on Parallelism
(SIPAR); SPPEDUP Soc",
treatment = "P Practical",
year = 1997
}
@Book{PySuccess2002,
Title = {Python Success Stories: 8 True Tales of Flexibility,
Speed, and Improved Productivity},
Publisher = {O'Reilly Associates},
year = 2002
}
@Book{PySuccess2005,
Title = {Python Success Stories Volume {II}: 12 More True Tales},
Publisher = {O'Reilly Associates},
year = 2005
}
@Book{BIO2010,
Title = {{BIO} 2010: {Transforming} Undergraduate Education for
Future Research Biologists},
Publisher = {The National Academies Press},
year = 2003
}
@Book{NRC1999,
Title = {Transforming Undergraduate Education in Science,
Mathmatics, Engineering, and Technology },
Publisher = {The National Academies Press},
year = 1999
}
@Misc{BoostReview,
Title = {{Boost} Formal Review Process},
Note = {\texttt{http://www.boost.org/more/formal\_review\_process.htm}},
year = 2004
}
@Misc{EnthoughtPython,
Title = {Enthought {Python}},
Note = {\texttt{http://www.enthought.com/downloads/downloads.htm}},
year = 2005
}
@Misc{PerformancePython,
Title = {Performance {Python}},
Note = {\\\texttt{http://www.scipy.org/documentation/weave/weaveperformance.html}},
year = 2005
}
@Misc{VisionEgg,
Title = {{Vision Egg}},
Note = {\texttt{http://visionegg.org}},
year = 2005
}
@Misc{PythonEducation,
Title = {{Python} in Education},
Note = {\texttt{http://www.python.org/sigs/edu-sig}},
year = 2005
}
@Book{VanRossumDrake2003,
Editor = {G. Van Rossum, F. L., Jr. Drake},
Title = {An Introduction to {Python}},
Publisher = {Network Theory Ltd.},
year = 2003
}
@Misc{OpenCourseWare,
Title = {Open Course Ware},
HowPublished = {http://ocw.mit.edu/OcwWeb/index.htm},
year = 1999
}
@Misc{top500,
Title = {TOP 500 Supercomputer Sites},
HowPublished = {http://www.top500.org},
date-added = {2005-05-24 10:58:18 -0700},
date-modified = {2005-05-24 10:58:50 -0700}
}
@Misc{FreeBSD,
Title = {The {FreeBSD} {Project}},
HowPublished = {http://www.freebsd.org/},
date-added = {2005-05-23 16:35:30 -0700},
date-modified = {2005-05-24 09:58:06 -0700},
year = 2005
}
@Misc{GNU,
Title = {The {GNU} {P}roject},
HowPublished = {http://www.gnu.org/},
date-added = {2005-05-23 16:34:45 -0700},
date-modified = {2005-05-24 09:58:15 -0700},
year = 2005
}
@InProceedings{Schneideretal2004,
Author = {A.R. Schneider, T.J. Lewis, H.A. Swadlow, and J.
Rinzel},
Title = {The Influence of Electrical Coupling on Synchrony in
Fast-Spiking interneurons in Layer 4 Neocortex},
BookTitle = {Society for Neuroscience Abstracts},
year = 2004
}
@Article{AckermannRWQIF04,
Author = {M. Ackermann and O. Robach and C. Walker and C. Quiros
and H. Isern and S. Ferrer},
Title = {Hydrogenation of Carbon Monoxide on {Ni}(1 1 1)
investigated with surface X-ray diffraction at
atmospheric pressure},
Journal = {Surface Science},
Volume = {557},
Pages = {21-30},
year = 2004
}
@Misc{AMD2005,
Author = {AMD},
Title = {{AMD} Multi-core},
Note = {http://multicore.amd.com/},
institution = {Advanced Micro Devices},
year = 2005
}
@Book{LAPACK,
Author = {Anderson, E. and Bai, Z. and Bischof, C. and
Blackford, S. and Demmel, J. and Dongarra, J. and Du
Croz, J. and Greenbaum, A. and Hammarling, S. and
McKenney, A. and Sorensen, D.},
Title = {{LAPACK} Users' Guide},
Publisher = {Society for Industrial and Applied Mathematics},
Address = {Philadelphia, PA},
Edition = {Third},
isbn = {0-89871-447-8 (paperback)},
year = 1999
}
@Book{ArnoldEtal2005,
Author = {K. Arnold and J. G. and D. Holmes},
Title = {{Java(TM)} Programming Language},
Publisher = {Addison-Wesley Professional},
year = 2005
}
@Misc{AschmanFearick2005,
Author = {David Aschman and Roger Fearick},
Title = {PHY321: {Advanced} Physics},
HowPublished = {http://www.phy.uct.ac.za/courses/phy321f/index.htm},
year = 2005
}
@Article{Backus1963,
Author = "J. W. Backus and others",
Title = "{Algol 60} --- Revised Report on the Algorithmic
Language",
Journal = "Communications of the ACM",
Volume = "6",
Number = "1",
Pages = "1--17",
bibdate = "Tue Dec 26 16:31:34 1995",
coden = "CACMA2",
issn = "0001-0782",
month = jan,
year = 1963
}
@Article{Bae2003,
Author = {A. B\"acker},
Title = {Numerical aspects of eigenvalue and eigenfunction
computations for chaotic quantum system},
Journal = {in: {\it The Mathematical Aspects of Quantum Maps}, M.
Degli Esposti and S. Graffi (Eds.), Springer Lecture
Notes in Physics {\bf 618}},
Volume = {},
Pages = {91--144},
abstract = {We give an introduction to some of the numerical
aspects in quantum chaos. The classical dynamics of
two--dimensional area--preserving maps on the torus is
illustrated using the standard map and a perturbed cat
map. The quantization of area--preserving maps given by
their generating function is discussed and for the
computation of the eigenvalues a computer program in
Python is presented. We illustrate the eigenvalue
distribution for two types of perturbed cat maps, one
leading to COE and the other to CUE statistics. For the
eigenfunctions of quantum maps we study the
distribution of the eigenvectors and compare them with
the corresponding random matrix distributions. The
Husimi representation allows for a direct comparison of
the localization of the eigenstates in phase space with
the corresponding classical structures. Examples for a
perturbed cat map and the standard map with different
parameters are shown. Billiard systems and the
corresponding quantum billiards are another important
class of systems (which are also relevant to
applications, for example in mesoscopic physics). We
provide a detailed exposition of the boundary integral
method, which is one important method to determine the
eigenvalues and eigenfunctions of the Helmholtz
equation. We discuss several methods to determine the
eigenvalues from the Fredholm equation and illustrate
them for the stadium billiard. The occurrence of
spurious solutions is discussed in detail and
illustrated for the circular billiard, the stadium
billiard, and the annular sector billiard. We emphasize
the role of the normal derivative function to compute
the normalization of eigenfunctions, momentum
representations or autocorrelation functions in a very
efficient and direct way. Some examples for these
quantities are given and discussed. },
annote = {},
url = {http://www.physik.tu-dresden.de/~baecker/pub18.html},
url2 = {http://www.physik.uni-ulm.de/theo/qc/ulm-tp/tp02-4.ps.gz},
url3 = {http://www.springer.de/cgi-bin/search_book.pl?isbn=3-540-02623-1},
url_python_code = {http://www.physik.tu-dresden.de/~baecker/qmaps.html},
year = 2003
}
@Article{BaeKetMon2005,
Author = {A. B\"acker and R. Ketzmerick and A. Monastra},
Title = {Flooding of chaotic eigenstates into regular phase
space islands},
Journal = {Phys.\ Rev.\ Lett.},
Volume = 94,
Pages = {054102 (4 pages)},
Note = {},
abstract = { We introduce a criterion for the existence of regular
states in systems with a mixed phase space. If this
condition is not fulfilled chaotic eigenstates
substantially extend into a regular island. Wave
packets started in the chaotic sea progressively flood
the island. The extent of flooding by eigenstates and
wave packets increases logarithmically with the size of
the chaotic sea and the time, respectively. This new
effect can be observed for island chains with just 10
islands.},
annote = {},
checked = {},
title_ = {Flooding of regular islands by chaotic states },
url = {http://link.aps.org/abstract/PRL/v94/e054102},
url2 = {http://www.physik.tu-dresden.de/~baecker/pub21.html},
year = 2005
}
@InProceedings{Barker1999,
Author = {Barker, C. H. },
Title = {The {NOAA} Trajectory Analysis Planner: {TAP II}},
BookTitle = {Proceedings of the Oceans '99: MTS/IEEE Seattle, WA},
month = {September},
year = 1999
}
@InProceedings{BarkerHealy2001,
Author = {Barker, C. H. and Healy, W. P.},
Title = {Statistical Analysis of Oil Spill Response Options: A
{NOAA}-{U.S.} {Navy} Joint Project},
BookTitle = {Proceedings of the International Oil Spill Conference},
Pages = {883-890},
year = 2001
}
@InProceedings{BarkerWesley2004,
Author = {Barker, C. H. and Wesley, David},
Title = {Modeling Potential Skimmer and Booming Strategy
Effectiveness},
BookTitle = {Proceedings of the Twenty-Seventh Arctic and Marine
Oil spill Program (AMOP) Technical Seminar},
Pages = {397--419},
Address = {Ottawa, ON},
Organization = {Environment Canada},
year = 2004
}
@InProceedings{BarkerWesley2005,
Author = {Barker, Christopher H. and Wesley, David.},
Title = {The Trajectory Recovery Analysis Planner ({TRAP}): {A}
Tool for Modeling the Potential Success of Response
Plans},
BookTitle = {Proceedings of the International Oil Spill Conference},
Address = {Miami, FL},
year = 2005
}
@InProceedings{BarrettEtal2004,
Author = {Barrett, P. and J.D. Hunter and P. Greenfield},
Title = {Matplotlib - {A} Portable {Python} Plotting Package},
BookTitle = {Astronomical Data Analysis Software \& Systems XIV.},
year = 2004
}
@Book{Beasley,
Author = {Beasley, D.},
Title = {Python Essential Reference},
Publisher = {New Riders Publishing},
Edition = {2nd},
year = 2001
}
@Article{Beazley1998,
Author = "David Beazley",
Title = "{SWIG} and Automated {C/C++} Scripting Extensions",
Journal = j-ddj,
Volume = "23",
Number = "2",
Pages = "30, 32, 34--36, 100",
abstract = "SWIG, short for ``Simplified Wrapper and Interface
Generator,'' is a freely available tool that lets you
generate interfaces to a variety of scripting languages
from a common interface description",
acknowledgement = ack-nhfb,
bibdate = "Sat Mar 07 08:28:08 1998",
coden = "DDJOEB",
issn = "1044-789X",
month = feb,
year = 1998
}
@Book{BerginEtal1996,
Author = {Thomas J. Bergin and Richard G. Gibson and Richard G.
Gibson},
Title = {History of Programming Languages},
Publisher = { Addison-Wesley Professional},
year = 1996
}
@Article{Bohannon2005,
Author = {J. Bohannon},
Title = {Grassroots Supercomputing},
Journal = {Science},
Volume = 308,
Number = 5723,
year = 2005
}
@InBook{BuckheitDonoho1995,
Author = {J.B. Buckheit and D.L. Donoho},
Editor = {A. Antoniadis},
Title = {Wavelets and Statistics},
Chapter = {WaveLab and Reproducible Research},
Publisher = {Springer-Verlag},
year = 1995
}
@Article{Butterfield2004,
Author = {Butterfield, A. and Vedagiri, V. and Lang, E. and
Lawrence, C. and Wakefield, M. J. and Isaev, A. and
Huttley, G. A.},
Title = {PyEvolve: {A} Toolkit for Statistical Modelling of
Molecular Evolution},
Journal = {BMC Bioinformatics},
Volume = {5},
Number = {1},
Pages = {1},
date-modified = {2005-01-23 15:11:38 +1100},
year = 2004
}
@Article{CabreraMilton2004,
Author = {Cabrera, JL and Milton, JG},
Title = {Human stick balancing: tuning Levy flights to improve
balance control},
Journal = {Chaos},
Volume = 14,
Number = 3,
year = 2004
}
@InProceedings{Coifman92c,
Author = {R.R. Coifman and Y. Meyer and V. Wickehauser},
Title = {Wavelet analysis and signal processing},
BookTitle = {Wavelets and their Applications},
Editor = {\mbox{Ruskai et al}},
Pages = {153-178},
Publisher = {Jones and Bartlett},
year = 1992
}
@Article{Costa2002,
Author = {D Costa},
Title = {Hyper-Threading and Multicore {CPUs}},
Journal = {CPU Planet},
Note = {09/13/2002},
year = 2002
}
@Article{Cottom2003,
Author = "Teresa L. Cottom",
Title = "Using {SWIG} to Bind {C++} to {Python}",
Journal = j-comput-sci-eng,
Volume = "5",
Number = "2",
Pages = "88--96, c3",
acknowledgement = ack-nhfb,
bibdate = "Sat Jan 3 18:25:05 MST 2004",
bibsource = "http://csdl.computer.org/comp/mags/cs/2003/02/c2toc.htm",
coden = "CSENFA",
issn = "1521-9615",
month = mar # "\slash " # apr,
url = "http://csdl.computer.org/comp/mags/cs/2003/02/c2088abs.htm;
http://csdl.computer.org/dl/mags/cs/2003/02/c2088.htm;
http://csdl.computer.org/dl/mags/cs/2003/02/c2088.pdf",
year = 2003
}
@Article{CropperComerford2004,
Author = {Cropper, W.P. and N.B. Comerford},
Title = {Optimizing Simulated Fertilizer Additions using a
Genetic Algorithm with a Nutrient Uptake Model},
Journal = {Ecological Modelling},
Volume = 185,
Pages = {271-281},
year = 2004
}
@Misc{Dalke2005,
Author = {Andrew Dalke},
Title = {Andrew Dalke's Dairy Archive},
HowPublished = {http://www.dalkescientific.com},
year = 2005
}
@Book{Daubechies92,
Author = {I. Daubechies},
Title = {Ten Lectures on Wavelets},
Publisher = {SIAM},
year = 1992
}
@Misc{pyro,
Author = {Immen de {J}ong},
Title = {Python {R}emote {O}bjects},
HowPublished = {http://pyro.sourceforge.net/},
date-added = {2005-05-23 17:07:29 -0700},
date-modified = {2005-05-23 17:08:13 -0700},
year = 2005
}
@Book{DowneyEtal2002,
Author = {Allen Downey and Jeffrey Elkner and Chris Meyers},
Title = {How to Think Like a Computer Scientist: {Learning with
Python}},
Publisher = {Green Tea Home Page},
year = 2002
}
@Article{Dubois1996b,
Author = "P. F. Dubois and K. Hinsen and J. Hugunin",
Title = "Numerical {Python}",
Journal = j-comp-physics,
Volume = "10",
Number = "3",
Pages = "262--267",
abstract = "Python is a small and easy-to-learn language with
surprising capabilities. It is an interpreted
object-oriented scripting language and has a full range
of sophisticated features such as first-class
functions, garbage collection, and exception handling.
Python has properties that make it especially appealing
for scientific programming: Python is quite simple and
easy to learn, but it is a full and complete language.
It is simple to extend Python with your own compiled
objects and functions. Python is portable, from Unix to
Windows 95 to Linux to Macintosh. Python is free, with
no license required even if you make a commercial
product out of it. Python has a large user-contributed
library of ``modules''. These modules cover a wide
variety of needs, such as audio and image processing,
World Wide Web programming, and graphical user
interfaces. In particular, there is an interface to the
popular Tk package for building windowing applications.
And now, Python has a high-performance array module
similar to the facilities in specialized array
languages such as Matlab, IDL, Basis, or Yorick. This
extension also adds complex numbers to the language.
Array operations in Python lead to the execution of
loops in C, so that most of the work is done at full
compiled speed.",
acknowledgement = ack-nhfb,
bibdate = "Sun Apr 13 12:29:32 MDT 1997",
bibsource = "ftp://ftp.math.utah.edu/pub/tex/bib/linux.bib",
classcodes = "C6140D (High level languages); C6110J (Object-oriented
programming); C6150C (Compilers, interpreters and other
processors); C7300 (Natural sciences computing)",
coden = "CPHYE2",
corpsource = "Lawrence Livermore Nat. Lab., CA, USA",
issn = "0894-1866",
keywords = "applications; compiled objects; exception; first-class
functions; garbage collection; graphical user
interfaces; handling; high-performance array module;
interpreted object-oriented scripting language; natural
sciences computing; object-oriented languages; program
interpreters; Python; scientific programming; Wide Web
programming; windowing; World",
month = may # "\slash " # jun,
treatment = "P Practical",
year = 1996
}
@Article{Dubois1996a,
Author = "P. F. Dubois and T.-Y. Yang",
Title = "Extending {Python} [Object-oriented language]",
Journal = j-comp-physics,
Volume = "10",
Number = "4",
Pages = "359--365",
acknowledgement = ack-nhfb,
bibdate = "Thu May 21 19:02:04 MDT 1998",
classification = "C6110J (Object-oriented programming); C6120 (File
organisation); C6130 (Data handling techniques); C6140D
(High level languages); C6150C (Compilers, interpreters
and other processors); C7300 (Natural sciences
computing)",
coden = "CPHYE2",
corpsource = "Lawrence Livermore Nat. Lab., CA, USA",
issn = "0894-1866",
keywords = "C language; C++; C++ static-constructor problem,;
compiled sources; dynamic loading; embedding; exception
handling; first-class functions; Fortran; free
language; garbage collection; high-performance
numerical extension; interpreted language; natural
sciences computing; object types; object- oriented
languages; object-oriented language; object-oriented
programming; portable language; program interpreters;
programmable application; Python interpreter; Python
language; Python program; scientific programming;
storage management; user interface",
month = jul # "\slash " # aug,
treatment = "P Practical",
year = 1996
}
@Article{Dubois1996c,
Author = "Paul F. Dubois and T.-Y. Yang",
Title = "Scientific Programming: Extending {Python}",
Journal = j-comp-physics,
Volume = "10",
Number = "4",
Pages = "359--??",
acknowledgement = ack-nhfb,
bibdate = "Thu May 21 16:28:33 MDT 1998",
coden = "CPHYE2",
issn = "0894-1866",
month = "????",
year = 1996
}
@Misc{PyBibliotheca,
Author = {Jeff Elkner},
Title = {Python Bibliotheca},
Note = {http://www.ibiblio.org/obp/pyBiblio},
year = 1999
}
@InProceedings{Elkner2000,
Author = {Jeff Elkner},
Title = {Using Python in a High School Computer Science Program},
BookTitle = {Proceedings of the 8th International Python Conference},
year = 2000
}
@Article{Figgins2000,
Author = {Stephen Figgins},
Title = {Teaching Math with {Python}},
Journal = {OnLAMP.com},
year = 2000
}
@InProceedings{FiringEtal2002,
Author = {Firing, J. and R. Brainard and E. Firing},
Title = {Ten Years of Shipboard {ADCP} Data along the
Northwestern {Hawaiian} Islands},
BookTitle = {Ocean Sciences Meeting},
year = 2002
}
@Article{FossMilton2000,
Author = {Foss, J. and Milton, J.G.},
Title = {Multistability in Recurrent Neural Loops Arising from
Delay},
Journal = {J Neurophysiol},
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@Misc{Zelle1998,
Author = {John M. Zelle},
Title = {Python as a First Language},
HowPublished = {13th Annual Midwest Computer Conference},
year = 1998
}
