/* Copyright (C) 2006-2010 Joan Queralt Molina
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
*
*/
package biogenesis;
import javax.swing.*;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import org.xml.sax.SAXException;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
public class LabWindow extends JDialog implements ActionListener, ChangeListener {
private static final long serialVersionUID = Utils.FILE_VERSION;
protected MainWindow mainWindow;
protected List<Gene> genesList;
protected JButton cancelButton;
protected JButton okButton;
protected JPanel genesPanel;
protected JPanel drawPanel;
protected JScrollPane genesScroll;
protected JLabel energyLabel;
protected JLabel segmentsLabel;
protected JComboBox symmetryCombo;
protected JComboBox mirrorCombo;
protected JComboBox disperseCombo;
protected int symmetry=2;
protected int energy=40;
protected int mirror=0;
protected boolean disperseChildren = false;
public LabWindow(MainWindow v, GeneticCode gc) {
super(v, Messages.getString("T_GENETIC_LABORATORY")); //$NON-NLS-1$
init(v, gc);
}
public LabWindow(MainWindow v) {
super(v, Messages.getString("T_GENETIC_LABORATORY")); //$NON-NLS-1$
init(v, v.getVisibleWorld().clippedGeneticCode);
}
private void init(MainWindow v, GeneticCode gc) {
mainWindow = v;
genesList = new ArrayList<Gene>();
if (gc != null)
importGeneticCode(gc);
setDefaultCloseOperation(DISPOSE_ON_CLOSE);
setComponents();
pack();
//setResizable(false);
cancelButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent evt) {
dispose();
}
});
okButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent evt) {
if (genesList.size() > 0)
mainWindow.getVisibleWorld().setClippedGeneticCode(new GeneticCode(genesList,symmetry, mirror, disperseChildren));
dispose();
}
});
setVisible(true);
}
/* Initialize the variables of this dialog using a previously existing genetic code */
private void importGeneticCode(GeneticCode g) {
energy = g.getReproduceEnergy();
disperseChildren = g.getDisperseChildren();
mirror = g.getMirror();
symmetry = g.getSymmetry();
for (int i=0; i<g.getNGenes(); i++)
genesList.add((Gene)g.getGene(i).clone());
}
/* Initialize all the components of the dialog */
protected void setComponents() {
getContentPane().setLayout(new BorderLayout());
JPanel generalPanel = new JPanel();
generalPanel.setLayout(new GridBagLayout());
GridBagConstraints gridBagConstraints = new GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 0;
gridBagConstraints.anchor = GridBagConstraints.WEST;
gridBagConstraints.weightx = 1.0;
generalPanel.add(new JLabel(Messages.getString("T_SEGMENTS"),SwingConstants.CENTER), gridBagConstraints); //$NON-NLS-1$
gridBagConstraints.gridx = 1;
gridBagConstraints.gridy = 0;
segmentsLabel = new JLabel(Integer.toString(genesList.size() * symmetry));
generalPanel.add(segmentsLabel, gridBagConstraints);
gridBagConstraints.gridx = 2;
gridBagConstraints.gridy = 0;
generalPanel.add(new JLabel(Messages.getString("T_ENERGY_TO_REPRODUCE"),SwingConstants.CENTER), gridBagConstraints); //$NON-NLS-1$
gridBagConstraints.gridx = 3;
gridBagConstraints.gridy = 0;
energyLabel = new JLabel(Integer.toString(energy));
generalPanel.add(energyLabel, gridBagConstraints);
gridBagConstraints.gridx = 4;
gridBagConstraints.gridy = 0;
generalPanel.add(new JLabel(Messages.getString("T_LIFE_EXPECTANCY"),SwingConstants.CENTER), gridBagConstraints); //$NON-NLS-1$
gridBagConstraints.gridx = 5;
gridBagConstraints.gridy = 0;
JLabel life = new JLabel(Integer.toString(Utils.MAX_AGE));
generalPanel.add(life, gridBagConstraints);
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 1;
generalPanel.add(new JLabel(Messages.getString("T_SYMMETRY"),SwingConstants.CENTER), gridBagConstraints); //$NON-NLS-1$
gridBagConstraints.gridx = 1;
gridBagConstraints.gridy = 1;
String[] symmetryValues = {"1","2","3","4","5","6","7","8"}; //$NON-NLS-1$//$NON-NLS-2$ //$NON-NLS-3$
symmetryCombo = new JComboBox(symmetryValues);
symmetryCombo.setSelectedItem(Integer.toString(symmetry));
symmetryCombo.addItemListener(new ItemListener() {
public void itemStateChanged(ItemEvent evt) {
if (evt.getStateChange() == ItemEvent.SELECTED) {
symmetry = Integer.parseInt((String)symmetryCombo.getSelectedItem());
energy = 40 + 3 * symmetry * genesList.size();
energyLabel.setText(Integer.toString(energy));
segmentsLabel.setText(Integer.toString(genesList.size() * symmetry));
drawPanel.repaint();
}
}
});
generalPanel.add(symmetryCombo, gridBagConstraints);
gridBagConstraints.gridx = 2;
gridBagConstraints.gridy = 1;
generalPanel.add(new JLabel(Messages.getString("T_MIRROR"),SwingConstants.CENTER), gridBagConstraints); //$NON-NLS-1$
gridBagConstraints.gridx = 3;
gridBagConstraints.gridy = 1;
String[] noyesValues = {Messages.getString("T_NO"), Messages.getString("T_YES")}; //$NON-NLS-1$ //$NON-NLS-2$
mirrorCombo = new JComboBox(noyesValues);
mirrorCombo.setSelectedIndex(mirror);
mirrorCombo.addItemListener(new ItemListener() {
public void itemStateChanged(ItemEvent evt) {
if (evt.getStateChange() == ItemEvent.SELECTED) {
mirror = mirrorCombo.getSelectedIndex();
drawPanel.repaint();
}
}
});
generalPanel.add(mirrorCombo, gridBagConstraints);
gridBagConstraints.gridx = 4;
gridBagConstraints.gridy = 1;
generalPanel.add(new JLabel(Messages.getString("T_DISPERSE_CHILDREN"),SwingConstants.CENTER), gridBagConstraints); //$NON-NLS-1$
gridBagConstraints.gridx = 5;
gridBagConstraints.gridy = 1;
disperseCombo = new JComboBox(noyesValues);
disperseCombo.setSelectedIndex(disperseChildren==false?0:1);
disperseCombo.addItemListener(new ItemListener() {
public void itemStateChanged(ItemEvent evt) {
if (evt.getStateChange() == ItemEvent.SELECTED)
disperseChildren = disperseCombo.getSelectedIndex()==0? false: true;
}
});
generalPanel.add(disperseCombo, gridBagConstraints);
getContentPane().add(generalPanel,BorderLayout.NORTH);
genesPanel = new JPanel();
genesScroll = new JScrollPane(genesPanel);
genesScroll.setPreferredSize(new Dimension(440,300));
refreshGenesPanel();
getContentPane().add(genesScroll,BorderLayout.WEST);
drawPanel = new JPanel() {
private static final long serialVersionUID = 1L;
@Override
public void paintComponent (Graphics g) {
super.paintComponent(g);
draw(g);
}
};
drawPanel.setPreferredSize(new Dimension(200,200));
drawPanel.setBackground(Color.BLACK);
getContentPane().add(drawPanel,BorderLayout.CENTER);
JPanel buttonsPanel = new JPanel();
okButton = new JButton(Messages.getString("T_COPY_TO_CLIPBOARD")); //$NON-NLS-1$
buttonsPanel.add(okButton);
cancelButton = new JButton(Messages.getString("T_CANCEL")); //$NON-NLS-1$
buttonsPanel.add(cancelButton);
JButton clearButton = new JButton(Messages.getString("T_CLEAR")); //$NON-NLS-1$
clearButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent evt) {
genesList.clear();
refreshGenesPanel();
}
});
buttonsPanel.add(clearButton);
JButton importButton = new JButton(Messages.getString("T_IMPORT")); //$NON_NLS-1$
importButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
GeneticCode g;
try {
JFileChooser chooser = mainWindow.getGeneticCodeChooser();
chooser.setFileFilter(new BioFileFilter(BioFileFilter.GENETIC_CODE_EXTENSION));
int returnVal = chooser.showOpenDialog(null);
if (returnVal == JFileChooser.APPROVE_OPTION) {
try {
// Read XML code from file
BioXMLParser parser = new BioXMLParser();
g = parser.parseGeneticCode(chooser.getSelectedFile());
genesList.clear();
importGeneticCode(g);
refreshGenesPanel();
} catch (SAXException ex) {
System.err.println(ex.getMessage());
JOptionPane.showMessageDialog(null,Messages.getString("T_WRONG_FILE_VERSION"),Messages.getString("T_READ_ERROR"),JOptionPane.ERROR_MESSAGE); //$NON-NLS-1$ //$NON-NLS-2$
} catch (IOException ex) {
System.err.println(ex.getMessage());
JOptionPane.showMessageDialog(null,Messages.getString("T_CANT_READ_FILE"),Messages.getString("T_READ_ERROR"),JOptionPane.ERROR_MESSAGE); //$NON-NLS-1$ //$NON-NLS-2$
}
}
} catch (SecurityException ex) {
System.err.println(ex.getMessage());
JOptionPane.showMessageDialog(null,Messages.getString("T_PERMISSION_DENIED"),Messages.getString("T_PERMISSION_DENIED"),JOptionPane.ERROR_MESSAGE); //$NON-NLS-1$ //$NON-NLS-2$
}
}
});
buttonsPanel.add(importButton);
getContentPane().add(buttonsPanel,BorderLayout.SOUTH);
getRootPane().setDefaultButton(okButton);
}
public void actionPerformed(ActionEvent evt) {
if (evt.getActionCommand().startsWith("c")) {
int modifiedGene = Integer.parseInt(evt.getActionCommand().substring(1));
ColorComboBox colorCombo = (ColorComboBox) evt.getSource();
genesList.get(modifiedGene).setColor(colorCombo.getSelectedColor());
drawPanel.repaint();
}
// Add a new gene after the last one
if (evt.getActionCommand().equals("add")) { //$NON-NLS-1$
Gene gene = new Gene(2.0,0.0,Color.GREEN);
genesList.add(gene);
refreshGenesPanel();
}
// Deletes an existing gene
if (evt.getActionCommand().startsWith("d")) { //$NON-NLS-1$
int deletedGene = Integer.parseInt(evt.getActionCommand().substring(1));
genesList.remove(deletedGene);
refreshGenesPanel();
}
// Insert a new gene before the selected position
if (evt.getActionCommand().startsWith("i")) { //$NON-NLS-1$
Gene gene = new Gene(2.0,0.0,Color.GREEN);
int insertPosition = Integer.parseInt(evt.getActionCommand().substring(1));
genesList.add(insertPosition, gene);
refreshGenesPanel();
}
}
protected void refreshGenesPanel() {
genesPanel.removeAll();
GridBagLayout gridbag = new GridBagLayout();
GridBagConstraints constraints = new GridBagConstraints();
genesPanel.setLayout(gridbag);
Iterator<Gene> it;
int i;
Gene gene;
constraints.gridx = 1;
constraints.gridy = 0;
genesPanel.add(new JLabel(Messages.getString("T_GENE")), constraints); //$NON-NLS-1$
constraints.gridx = 2;
genesPanel.add(new JLabel(Messages.getString("T_LENGTH")), constraints); //$NON-NLS-1$
constraints.gridx = 3;
genesPanel.add(new JLabel(Messages.getString("T_ROTATION")), constraints); //$NON-NLS-1$
constraints.gridx = 4;
genesPanel.add(new JLabel(Messages.getString("T_COLOR2")), constraints); //$NON-NLS-1$
for (it = genesList.iterator(), i=0; it.hasNext(); i++) {
gene = it.next();
constraints.gridx = 1;
constraints.gridy = i+1;
JLabel label = new JLabel(i+": "); //$NON-NLS-1$
gridbag.setConstraints(label,constraints);
genesPanel.add(label);
constraints.gridx = 2;
LengthSpinner lengthSpinner = new LengthSpinner(gene);
lengthSpinner.addChangeListener(this);
genesPanel.add(lengthSpinner, constraints);
constraints.gridx = 3;
ThetaSpinner thetaSpinner = new ThetaSpinner(gene);
thetaSpinner.addChangeListener(this);
genesPanel.add(thetaSpinner, constraints);
constraints.gridx = 4;
ColorComboBox colorCombo = new ColorComboBox(gene.getColor());
colorCombo.addActionListener(this);
colorCombo.setActionCommand("c"+i);
genesPanel.add(colorCombo, constraints);
constraints.gridx = 5;
JButton insertButton = new JButton(Messages.getString("T_INSERT")); //$NON-NLS-1$
insertButton.setActionCommand("i"+i); //$NON-NLS-1$
gridbag.setConstraints(insertButton,constraints);
genesPanel.add(insertButton);
insertButton.addActionListener(this);
constraints.gridx = 6;
JButton deleteButton = new JButton(Messages.getString("T_DELETE")); //$NON-NLS-1$
deleteButton.setActionCommand("d"+i); //$NON-NLS-1$
gridbag.setConstraints(deleteButton,constraints);
genesPanel.add(deleteButton);
deleteButton.addActionListener(this);
}
constraints.gridx = 1;
constraints.gridwidth = 2;
constraints.gridy = i+1;
JButton addButton = new JButton(Messages.getString("T_ADD")); //$NON-NLS-1$
addButton.setActionCommand("add"); //$NON-NLS-1$
gridbag.setConstraints(addButton,constraints);
genesPanel.add(addButton);
addButton.addActionListener(this);
energy = 40 + 3 * symmetry * genesList.size();
energyLabel.setText(Integer.toString(energy));
segmentsLabel.setText(Integer.toString(genesList.size() * symmetry));
validate();
repaint();
}
protected void draw(Graphics g) {
GeneticCode code = new GeneticCode(genesList, symmetry, mirror, false);
code.draw(g, drawPanel.getSize().width, drawPanel.getSize().height);
}
@Override
public void stateChanged(ChangeEvent evt) {
if (evt.getSource() instanceof LengthSpinner) {
LengthSpinner spinner = (LengthSpinner) evt.getSource();
spinner.getGene().setLength(spinner.getLength());
}
if (evt.getSource() instanceof ThetaSpinner) {
ThetaSpinner spinner = (ThetaSpinner) evt.getSource();
spinner.getGene().setTheta(spinner.getTheta());
}
drawPanel.repaint();
}
}
class LengthSpinner extends JSpinner {
private static final long serialVersionUID = Utils.VERSION;
private Gene _gene;
public LengthSpinner(Gene gene) {
super();
_gene = gene;
setModel(new SpinnerNumberModel(_gene.getLength(), 2.0, 18.0, 0.1));
setEditor(new JSpinner.NumberEditor(this, "#0.0"));
}
public Gene getGene() {
return _gene;
}
public void setGene(Gene gene) {
_gene = gene;
}
public double getLength() {
return ((SpinnerNumberModel)getModel()).getNumber().doubleValue();
}
}
class ThetaSpinnerModel extends SpinnerNumberModel {
private static final long serialVersionUID = Utils.VERSION;
int firstValue, lastValue;
public ThetaSpinnerModel(int value, int minimum, int maximum, int stepSize) {
super(value, minimum, maximum, stepSize);
firstValue = minimum;
lastValue = maximum;
}
@Override
public Object getNextValue() {
Object value = super.getNextValue();
if (value == null)
value = firstValue;
return value;
}
@Override
public Object getPreviousValue() {
Object value = super.getPreviousValue();
if (value == null)
value = lastValue;
return value;
}
}
class ThetaSpinner extends JSpinner {
private static final long serialVersionUID = Utils.VERSION;
private Gene _gene;
public ThetaSpinner(Gene gene) {
super();
_gene = gene;
int initialValue = (int)Math.round(_gene.getTheta()*180.0/Math.PI);
while (initialValue < 0) initialValue+=360;
while (initialValue > 359) initialValue-=360;
setModel(new ThetaSpinnerModel(initialValue, 0, 359, 1));
setEditor(new JSpinner.NumberEditor(this, "##0"));
}
public Gene getGene() {
return _gene;
}
public void setGene(Gene gene) {
_gene = gene;
}
public double getTheta() {
return ((SpinnerNumberModel)getModel()).getNumber().doubleValue()*Math.PI/180.0;
}
}
