Open Source MATLAB Software for BSD

GeographicLib is a small C++ library for: geodesic and rhumb line calculations; conversions between geographic, UTM, UPS, MGRS, geocentric, and local cartesian coordinates; gravity (e.g., EGM2008) and geomagnetic field (e.g., WMM2020) calculations.

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.

compariSong is an audio tool to support query by singing/humming. It compares a database of popular songs with a hummed-by-user melody and returns the closest matches.

Matlab's MAT-file I/O API in JAVA. Supports Matlab 5 MAT-flie format reading and writing. Written in pure JAVA.

Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.

Supports flow Simulation for Physics and Meso-Compartimental Simulations for Biological Systems. Uses a Container-Flow based System.

Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.

APEX Tools is a collection of utilities used in conjunction with the processing of airborne hyperspectral data developed for the ESA-Prodex supported Airborne Prism EXperiment (APEX).

This is a Content Based Image Retrieval Interface with only color features implemented. This is part of a thesis work to analyze the different color features and observe the performance on mainly corel5k images.

The Databionics ESOM Tools offer many data mining tasks using Emergent Self-Organizing Maps. Visualization, clustering, and classification of high-dimensional data using databionics principles can be performed interactively or automatically.

A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.

Extended Bioaccumulation Framework (ExBAF) is a tool for assessing bioaccumulation in foodwebs. Supports several bioaccumulation models and provides tools for analysis and visualization.

FAMOUSO is an event-based publish/subscribe middleware written in C++ for systems ranging from 8Bit micro-controllers up to 32Bit PC/Workstations.

A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.

Jmathtools: math java stuff designed to be easily used, modified and extended. Initially designed to help porting of matlab software to java. 2D/3D plot, linear algebra, basic statistics. Groovy wrapper providing syntax close to Matlab/Scilab.

The Digital Communication Systems Lib: This library contains digital communucations systems implementations, such as BSPK and MIMO - WOFDM. Various OpenSource Projects: 1. Password/Username/Domain Analyzer

This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian classifier using DEMass. DEMassBayes.7z has jar file to be used with WEKA and a readme file listing parameters used. The source files are included in DEMassBayes_Source.7z. 4. The four package is MassTER includes source and JAR file to be used with WEKA system..

The NJ toolbox (njTBX) is a matlab object API, built on top of Unidata's Netcdf-Java API to facilitate netCDF model data manipulation. Development of njTBX is a part of 'An Open-Source Community Model for Coastal Sediment Transport' project.

Nounou is a Java library for handling optical imaging data. The core consists of a modular stream of "filter blocks" that each modify or display the data. It is easily called from Mathematica and Matlab, for advanced figure output.

The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.

Client libraries for the D-Wave Orion Web Service

A particle swarm optimization demo written by students in the digital communication msc program (2010) at uni-kiel.

The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.

primeHandle is a set of data management tools in support of the PrIMe Initiative (http://primekinetics.org). primeHandle includes graphical user interfaces for searching through data collections, editing and submitting data to the PrIMe Data Depository.