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Single-cell analysis of breast cancer metastasis reveals epithelial-mesenchymal plasticity signatures associated with poor outcomes. J Clin Invest. 2024 Sep 03; 134(17).
Winkler J, Tan W, Diadhiou CM, McGinnis CS, Abbasi A, Hasnain S, Durney S, Atamaniuc E, Superville D, Awni L, Lee JV, Hinrichs JH, Wagner PS, Singh N, Hein MY, Borja M, Detweiler AM, Liu SY, Nanjaraj A, Sitarama V, Rugo HS, Neff N, Gartner ZJ, Oliveira Pisco A, Goga A, Darmanis S, Werb Z. PMID: 39225101; PMCID: PMC11364385.
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PubMed Mentions:
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D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response. bioRxiv. 2024 Jun 04.
Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Vielmetter J, Gong Y, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M. PMID: 37131803; PMCID: PMC10153191.
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PubMed Mentions:
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Patterning and folding of intestinal villi by active mesenchymal dewetting. Cell. 2024 Jun 06; 187(12):3072-3089.e20.
Huycke TR, Häkkinen TJ, Miyazaki H, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, Oria R, Weaver VM, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. PMID: 38781967; PMCID: PMC11166531.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Coordinated immune dysregulation in juvenile dermatomyositis revealed by single-cell genomics. JCI Insight. 2024 May 14; 9(12).
Rabadam G, Wibrand C, Flynn E, Hartoularos GC, Sun Y, Madubata C, Fragiadakis GK, Ye CJ, Kim S, Gartner ZJ, Sirota M, Neely J. PMID: 38743491.
View in:
PubMed Mentions:
1 Fields:
Translation:
HumansCells
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Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains. Nat Cell Biol. 2024 Feb; 26(2):250-262.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. PMID: 38321203.
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PubMed Mentions:
3 Fields:
Translation:
HumansAnimals
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MAGIC matrices: freeform bioprinting materials to support complex and reproducible organoid morphogenesis. bioRxiv. 2024 Feb 05.
Graham AJ, Khoo MWL, Srivastava V, Viragova S, Parekh K, Morley CD, Bird M, Lebel P, Kumar S, Klein O, Gómez-Sjöberg R, Gartner ZJ. PMID: 38370663; PMCID: PMC10871257.
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PubMed Mentions:
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deMULTIplex2: robust sample demultiplexing for scRNA-seq. Genome Biol. 2024 01 30; 25(1):37.
Zhu Q, Conrad DN, Gartner ZJ. PMID: 38291503; PMCID: PMC10829271.
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PubMed Mentions:
2 Fields:
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Coordinated immune dysregulation in Juvenile Dermatomyositis revealed by single-cell genomics. bioRxiv. 2023 Nov 10.
Rabadam G, Wibrand C, Flynn E, Hartoularos GC, Sun Y, Ye CJ, Kim S, Gartner Z, Sirota M, Neely J. PMID: 37986917; PMCID: PMC10659396.
View in:
PubMed Mentions:
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Epithelial TNF controls cell differentiation and CFTR activity to maintain intestinal mucin homeostasis. J Clin Invest. 2023 10 16; 133(20).
Reyes EA, Castillo-Azofeifa D, Rispal J, Wald T, Zwick RK, Palikuqi B, Mujukian A, Rabizadeh S, Gupta AR, Gardner JM, Boffelli D, Gartner ZJ, Klein OD. PMID: 37643009; PMCID: PMC10575728.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Loss of PPARγ activity characterizes early protumorigenic stromal reprogramming and dictates the therapeutic window of opportunity. Proc Natl Acad Sci U S A. 2023 10 17; 120(42):e2303774120.
Caruso JA, Wang X, Murrow LM, Rodriguez CI, Chen-Tanyolac C, Vu L, Chen YY, Gascard P, Gartner ZJ, Kerlikowske K, Tlsty TD. PMID: 37816052; PMCID: PMC10589683.
View in:
PubMed Mentions:
1 Fields:
Translation:
HumansAnimalsCells
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Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains. bioRxiv. 2023 Sep 22.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. PMID: 37790430; PMCID: PMC10542170.
View in:
PubMed Mentions:
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Patterning and folding of intestinal villi by active mesenchymal dewetting. bioRxiv. 2023 Aug 15.
Huycke TR, Miyazaki H, Häkkinen TJ, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. PMID: 37425793; PMCID: PMC10326967.
View in:
PubMed Mentions:
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Configurational entropy is an intrinsic driver of tissue structural heterogeneity. bioRxiv. 2023 Jul 02.
Srivastava V, Hu JL, Garbe JC, Veytsman B, Shalabi SF, Yllanes D, Thomson M, LaBarge MA, Huber G, Gartner ZJ. PMID: 37425903; PMCID: PMC10327153.
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PubMed Mentions:
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Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Syst. 2023 04 19; 14(4):252-257.
Adler FR, Anderson ARA, Bhushan A, Bogdan P, Bravo-Cordero JJ, Brock A, Chen Y, Cukierman E, DelGiorno KE, Denis GV, Ferrall-Fairbanks MC, Gartner ZJ, Germain RN, Gordon DM, Hunter G, Jolly MK, Karacosta LG, Mythreye K, Katira P, Kulkarni RP, Kutys ML, Lander AD, Laughney AM, Levine H, Lou E, Lowenstein PR, Masters KS, Pe'er D, Peyton SR, Platt MO, Purvis JE, Quon G, Richer JK, Riddle NC, Rodriguez A, Snyder JC, Lee Szeto G, Tomlin CJ, Yanai I, Zervantonakis IK, Dueck H. PMID: 37080161; PMCID: PMC10760508.
View in:
PubMed Mentions:
2 Fields:
Translation:
Humans
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deMULTIplex2: robust sample demultiplexing for scRNA-seq. bioRxiv. 2023 Apr 12.
Zhu Q, Conrad DN, Gartner ZJ. PMID: 37090649; PMCID: PMC10120618.
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PubMed Mentions:
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Microfluidics-free single-cell genomics with templated emulsification. Nat Biotechnol. 2023 Nov; 41(11):1557-1566.
Clark IC, Fontanez KM, Meltzer RH, Xue Y, Hayford C, May-Zhang A, D'Amato C, Osman A, Zhang JQ, Hettige P, Ishibashi JSA, Delley CL, Weisgerber DW, Replogle JM, Jost M, Phong KT, Kennedy VE, Peretz CAC, Kim EA, Song S, Karlon W, Weissman JS, Smith CC, Gartner ZJ, Abate AR. PMID: 36879006; PMCID: PMC10635830.
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PubMed Mentions:
26 Fields:
Translation:
HumansAnimalsCells
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Programming the Self-Organization of Endothelial Cells into Perfusable Microvasculature. Tissue Eng Part A. 2023 02; 29(3-4):80-92.
Cabral KA, Srivastava V, Graham AJ, Coyle MC, Stashko C, Weaver V, Gartner ZJ. PMID: 36181350; PMCID: PMC10266707.
View in:
PubMed Mentions:
3 Fields:
Translation:
Cells
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Adherens junctions organize size-selective proteolytic hotspots critical for Notch signalling. Nat Cell Biol. 2022 12; 24(12):1739-1753.
Kwak M, Southard KM, Kim WR, Lin A, Kim NH, Gopalappa R, Lee HJ, An M, Choi SH, Jung Y, Noh K, Farlow J, Georgakopoulos A, Robakis NK, Kang MK, Kutys ML, Seo D, Kim HH, Kim YH, Cheon J, Gartner ZJ, Jun YW. PMID: 36456828; PMCID: PMC10665132.
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PubMed Mentions:
5 Fields:
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Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation. Sci Transl Med. 2022 08 31; 14(660):eabi8633.
Kummerlowe C, Mwakamui S, Hughes TK, Mulugeta N, Mudenda V, Besa E, Zyambo K, Shay JES, Fleming I, Vukovic M, Doran BA, Aicher TP, Wadsworth MH, Bramante JT, Uchida AM, Fardoos R, Asowata OE, Herbert N, Yilmaz ÖH, Kløverpris HN, Garber JJ, Ordovas-Montañes J, Gartner ZJ, Wallach T, Shalek AK, Kelly P. PMID: 36044598; PMCID: PMC9594855.
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PubMed Mentions:
9 Fields:
Translation:
Humans
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A reductionist approach to determine the effect of cell-cell contact on human epidermal stem cell differentiation. Acta Biomater. 2022 09 15; 150:265-276.
Louis B, Tewary M, Bremer AW, Philippeos C, Negri VA, Zijl S, Gartner ZJ, Schaffer DV, Watt FM. PMID: 35926780; PMCID: PMC9810539.
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PubMed Mentions:
1 Fields:
Translation:
HumansCells
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Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution. Cell Syst. 2022 08 17; 13(8):644-664.e8.
Murrow LM, Weber RJ, Caruso JA, McGinnis CS, Phong K, Gascard P, Rabadam G, Borowsky AD, Desai TA, Thomson M, Tlsty T, Gartner ZJ. PMID: 35863345; PMCID: PMC9590200.
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PubMed Mentions:
9 Fields:
Translation:
Humans
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Systematically quantifying morphological features reveals constraints on organoid phenotypes. Cell Syst. 2022 07 20; 13(7):547-560.e3.
Beck LE, Lee J, Coté C, Dunagin MC, Lukonin I, Salla N, Chang MK, Hughes AJ, Mornin JD, Gartner ZJ, Liberali P, Raj A. PMID: 35705097; PMCID: PMC9350855.
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PubMed Mentions:
4 Fields:
Translation:
Animals
-
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution. Cell. 2022 05 26; 185(11):1905-1923.e25.
Yang D, Jones MG, Naranjo S, Rideout WM, Min KHJ, Ho R, Wu W, Replogle JM, Page JL, Quinn JJ, Horns F, Qiu X, Chen MZ, Freed-Pastor WA, McGinnis CS, Patterson DM, Gartner ZJ, Chow ED, Bivona TG, Chan MM, Yosef N, Jacks T, Weissman JS. PMID: 35523183; PMCID: PMC9452598.
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PubMed Mentions:
64 Fields:
Translation:
Animals
-
Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Proc Natl Acad Sci U S A. 2022 04 12; 119(15):e2108760119.
Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. PMID: 35377797; PMCID: PMC9169651.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Bisphenol A replacement chemicals, BPF and BPS, induce protumorigenic changes in human mammary gland organoid morphology and proteome. Proc Natl Acad Sci U S A. 2022 03 15; 119(11):e2115308119.
Winkler J, Liu P, Phong K, Hinrichs JH, Ataii N, Williams K, Hadler-Olsen E, Samson S, Gartner ZJ, Fisher S, Werb Z. PMID: 35263230; PMCID: PMC8931256.
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PubMed Mentions:
7 Fields:
Translation:
Humans
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Abstract P5-06-02: A gene expression meta-analysis identifies microenvironment differences in cellular composition and cell-cell interactions associated with breast cancer invasion. Cancer Research. 2022 Feb 15; 82(4_Supplement):p5-06-02-p5-06-02.
Officer OA, Dempsey DA, Hasteh HF, Slyper SM, Segerstolpe SA, Klughammer KJ, Jane-Valbuena JJ, Rozenblatt-Rosen RO, Murrow ML, Gartner GZ, Regev RA, Yau YC, Tamayo TP, Harismendy HO. .
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Setting boundaries for tissue patterning. Science. 2022 Jan 07; 375(6576):26-27.
Huycke TR, Gartner ZJ. PMID: 34990228.
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PubMed Mentions: Fields:
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Single-Cell Protein Profiling by Microdroplet Barcoding and Next-Generation Sequencing. Methods Mol Biol. 2022; 2386:101-111.
Kim SC, Haliburton JR, Gartner ZJ, Abate AR. PMID: 34766267; PMCID: PMC9122841.
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PubMed Mentions: Fields:
-
Membrane compartmentalization by adherens junctions creates a spatial switch for Notch signaling and function. . 2021 Nov 1.
Kwak KM, Southard SK, Kim KW, Lin LA, Kim KN, Gopalappa GR, An AM, Lee LH, Choi CS, Farlow FJ, Georgakopoulos GA, Robakis RN, Kang KM, Kutys KM, Seo SD, Kim KH, Kim KY, Cheon CJ, Gartner GZ, Jun JY. .
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Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids. Cell Stem Cell. 2021 12 02; 28(12):2153-2166.e6.
Popova G, Soliman SS, Kim CN, Keefe MG, Hennick KM, Jain S, Li T, Tejera D, Shin D, Chhun BB, McGinnis CS, Speir M, Gartner ZJ, Mehta SB, Haeussler M, Hengen KB, Ransohoff RR, Piao X, Nowakowski TJ. PMID: 34536354; PMCID: PMC8642295.
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PubMed Mentions:
55 Fields:
Translation:
HumansCells
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AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data. Genome Biol. 2021 09 01; 22(1):252.
Thibodeau A, Eroglu A, McGinnis CS, Lawlor N, Nehar-Belaid D, Kursawe R, Marches R, Conrad DN, Kuchel GA, Gartner ZJ, Banchereau J, Stitzel ML, Cicek AE, Ucar D. PMID: 34465366; PMCID: PMC8408950.
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PubMed Mentions:
27 Fields:
Translation:
HumansCells
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EPH/EPHRIN regulates cellular organization by actomyosin contractility effects on cell contacts. J Cell Biol. 2021 06 07; 220(6).
Kindberg AA, Srivastava V, Muncie JM, Weaver VM, Gartner ZJ, Bush JO. PMID: 33798261; PMCID: PMC8025214.
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PubMed Mentions:
12 Fields:
Translation:
HumansAnimalsCells
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Commitment and oncogene-induced plasticity of human stem cell-derived pancreatic acinar and ductal organoids. Cell Stem Cell. 2021 06 03; 28(6):1090-1104.e6.
Huang L, Desai R, Conrad DN, Leite NC, Akshinthala D, Lim CM, Gonzalez R, Muthuswamy LB, Gartner Z, Muthuswamy SK. PMID: 33915081; PMCID: PMC8202734.
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PubMed Mentions:
33 Fields:
Translation:
HumansCells
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Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Phys Biol. 2021 04 14; 18(4).
Lenne PF, Munro E, Heemskerk I, Warmflash A, Bocanegra-Moreno L, Kishi K, Kicheva A, Long Y, Fruleux A, Boudaoud A, Saunders TE, Caldarelli P, Michaut A, Gros J, Maroudas-Sacks Y, Keren K, Hannezo E, Gartner ZJ, Stormo B, Gladfelter A, Rodrigues A, Shyer A, Minc N, Maître JL, Di Talia S, Khamaisi B, Sprinzak D, Tlili S. PMID: 33276350; PMCID: PMC8380410.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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T cell circuits that sense antigen density with an ultrasensitive threshold. Science. 2021 03 12; 371(6534):1166-1171.
Hernandez-Lopez RA, Yu W, Cabral KA, Creasey OA, Lopez Pazmino MDP, Tonai Y, De Guzman A, Mäkelä A, Saksela K, Gartner ZJ, Lim WA. PMID: 33632893; PMCID: PMC8025675.
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PubMed Mentions:
61 Fields:
Translation:
HumansAnimalsCells
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Simple, Affordable, and Modular Patterning of Cells using DNA. J Vis Exp. 2021 02 24; (168).
Cabral KA, Patterson DM, Scheideler OJ, Cole R, Abate AR, Schaffer DV, Sohn LL, Gartner ZJ. PMID: 33720126; PMCID: PMC10870346.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Simple, Affordable, and Modular Patterning of Cells using DNA. Journal of Visualized Experiments. 2021 Feb 24; (168).
Cabral CK, Patterson PD, Scheideler SO, Cole CR, Abate AA, Schaffer SD, Sohn SL, Gartner GZ. .
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High diversity droplet microfluidic libraries generated with a commercial liquid spotter. Sci Rep. 2021 02 23; 11(1):4351.
Zhang JQ, Siltanen CA, Dolatmoradi A, Sun C, Chang KC, Cole RH, Gartner ZJ, Abate AR. PMID: 33623093; PMCID: PMC7902812.
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PubMed Mentions:
1 Fields:
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Expanding the boundaries of synthetic development. Dev Biol. 2021 06; 474:62-70.
Martyn I, Gartner ZJ. PMID: 33587913; PMCID: PMC8052276.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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Identifying Enthalpic Barriers to Entropically-Driven Structural Disruption in Breast Cancers. Biophysical Journal. 2021 Feb 1; 120(3):196a.
Srivastava SV, Hu HJ, Garbe GJ, Stampfer SM, LaBarge LM, Thomson TM, Gartner GZ. .
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No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood mononuclear cells. BMC Biol. 2021 01 20; 19(1):10.
McGinnis CS, Siegel DA, Xie G, Hartoularos G, Stone M, Ye CJ, Gartner ZJ, Roan NR, Lee SA. PMID: 33472616; PMCID: PMC7816397.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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Guiding tissue-scale self-organization. Nat Mater. 2021 01; 20(1):2-3.
Gartner ZJ, Hu JL. PMID: 33340008.
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PubMed Mentions:
4 Fields:
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Abstract 351: Alterations in immune cell signatures during breast cancer metastasis at single cell resolution. Cancer Research. 2020 Aug 15; 80(16_Supplement):351-351.
Winkler WJ, Tan TW, McGinnis MC, Gartner GZ, Darmanis DS, Werb WZ. .
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ZipSeq: barcoding for real-time mapping of single cell transcriptomes. Nat Methods. 2020 08; 17(8):833-843.
Hu KH, Eichorst JP, McGinnis CS, Patterson DM, Chow ED, Kersten K, Jameson SC, Gartner ZJ, Rao AA, Krummel MF. PMID: 32632238; PMCID: PMC7891292.
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PubMed Mentions:
57 Fields:
Translation:
AnimalsCells
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Organoid models for mammary gland dynamics and breast cancer. Curr Opin Cell Biol. 2020 10; 66:51-58.
Srivastava V, Huycke TR, Phong KT, Gartner ZJ. PMID: 32535255; PMCID: PMC8175015.
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PubMed Mentions:
19 Fields:
Translation:
HumansAnimals
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2063-P: Quantitative Analysis of Human and Mouse Islet Tissue Structure. Diabetes. 2020 Jun 1; 69(Supplement 1):2063-p.
CREASEY CO, SNEDDON SJ, GARTNER GZ. .
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High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. J Vis Exp. 2020 05 21; (159).
Zhang JQ, Chang KC, Liu L, Gartner ZJ, Abate AR. PMID: 32510483.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. Journal of Visualized Experiments. 2020 May 21; (159).
Zhang ZJ, Chang CK, Liu LL, Gartner GZ, Abate AA. .
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Linked optical and gene expression profiling of single cells at high-throughput. Genome Biol. 2020 02 24; 21(1):49.
Zhang JQ, Siltanen CA, Liu L, Chang KC, Gartner ZJ, Abate AR. PMID: 32093753; PMCID: PMC7041248.
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PubMed Mentions:
8 Fields:
Translation:
HumansAnimalsCells
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Balancing Act: Cell Polarity and Shape Compete to Ensure Robust Development. Dev Cell. 2019 12 02; 51(5):545-547.
Murrow LM, Gartner ZJ. PMID: 31794715.
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PubMed Mentions: Fields:
Translation:
Animals
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Antibody-Drug Conjugates Targeting the Urokinase Receptor (uPAR) as a Possible Treatment of Aggressive Breast Cancer. Antibodies (Basel). 2019 Nov 05; 8(4).
Harel ET, Drake PM, Barfield RM, Lui I, Farr-Jones S, Van't Veer L, Gartner ZJ, Green EM, Lourenço AL, Cheng Y, Hann BC, Rabuka D, Craik CS. PMID: 31694242; PMCID: PMC6963874.
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PubMed Mentions:
12
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Getting the measure of living biomaterials. Nature. 2019 08; 572(7767):38-39.
Gartner Z, Hughes A. PMID: 31358937.
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PubMed Mentions:
1 Fields:
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MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices. Nat Methods. 2019 07; 16(7):619-626.
McGinnis CS, Patterson DM, Winkler J, Conrad DN, Hein MY, Srivastava V, Hu JL, Murrow LM, Weissman JS, Werb Z, Chow ED, Gartner ZJ. PMID: 31209384; PMCID: PMC6837808.
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PubMed Mentions:
224 Fields:
Translation:
HumansAnimalsCells
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2151-P: Quantification of Tissue Structure in Human and Mouse Islets. Diabetes. 2019 Jun 1; 68(Supplement 1):2151-p.
CREASEY CO, ELNATAN ED, SNEDDON SJ, GARTNER GZ. .
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Human organoids: a new dimension in cell biology. Mol Biol Cell. 2019 05 01; 30(10):1129-1137.
Lehmann R, Lee CM, Shugart EC, Benedetti M, Charo RA, Gartner Z, Hogan B, Knoblich J, Nelson CM, Wilson KM. PMID: 31034354; PMCID: PMC6724519.
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PubMed Mentions:
49 Fields:
Translation:
HumansAnimalsCells
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DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors. Cell Syst. 2019 04 24; 8(4):329-337.e4.
McGinnis CS, Murrow LM, Gartner ZJ. PMID: 30954475; PMCID: PMC6853612.
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PubMed Mentions:
1013 Fields:
Translation:
Humans
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Paracrine costimulation of IFN-γ signaling by integrins modulates CD8 T cell differentiation. Proc Natl Acad Sci U S A. 2018 11 06; 115(45):11585-11590.
Krummel MF, Mahale JN, Uhl LFK, Hardison EA, Mujal AM, Mazet JM, Weber RJ, Gartner ZJ, Gérard A. PMID: 30348790; PMCID: PMC6233119.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
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Cell-Specific Chemical Delivery Using a Selective Nitroreductase-Nitroaryl Pair. ACS Chem Biol. 2018 10 19; 13(10):2888-2896.
Gruber TD, Krishnamurthy C, Grimm JB, Tadross MR, Wysocki LM, Gartner ZJ, Lavis LD. PMID: 30111097.
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PubMed Mentions:
10 Fields:
Translation:
HumansAnimalsCells
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Quanti.us: a tool for rapid, flexible, crowd-based annotation of images. Nat Methods. 2018 08; 15(8):587-590.
Hughes AJ, Mornin JD, Biswas SK, Beck LE, Bauer DP, Raj A, Bianco S, Gartner ZJ. PMID: 30065368; PMCID: PMC8863499.
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PubMed Mentions:
17 Fields:
Translation:
HumansAnimals
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An Oil-Free Picodrop Bioassay Platform for Synthetic Biology. Sci Rep. 2018 05 21; 8(1):7913.
Siltanen CA, Cole RH, Poust S, Chao L, Tyerman J, Kaufmann-Malaga B, Ubersax J, Gartner ZJ, Abate AR. PMID: 29784937; PMCID: PMC5962535.
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PubMed Mentions:
10 Fields:
Translation:
Animals
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Characterizing cellular mechanical phenotypes with mechano-node-pore sensing. Microsyst Nanoeng. 2018; 4.
Kim J, Han S, Lei A, Miyano M, Bloom J, Srivastava V, Stampfer MM, Gartner ZJ, LaBarge MA, Sohn LL. PMID: 29780657; PMCID: PMC5958920.
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PubMed Mentions:
14
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Phosphorylated EGFR Dimers Are Not Sufficient to Activate Ras. Cell Rep. 2018 03 06; 22(10):2593-2600.
Liang SI, van Lengerich B, Eichel K, Cha M, Patterson DM, Yoon TY, von Zastrow M, Jura N, Gartner ZJ. PMID: 29514089; PMCID: PMC5916813.
View in:
PubMed Mentions:
35 Fields:
Translation:
HumansCells
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Engineered Tissue Folding by Mechanical Compaction of the Mesenchyme. Dev Cell. 2018 01 22; 44(2):165-178.e6.
Hughes AJ, Miyazaki H, Coyle MC, Zhang J, Laurie MT, Chu D, Vavrušová Z, Schneider RA, Klein OD, Gartner ZJ. PMID: 29290586; PMCID: PMC5826757.
View in:
PubMed Mentions:
73 Fields:
Translation:
AnimalsCells
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Opportunities for organoids as new models of aging. J Cell Biol. 2018 01 02; 217(1):39-50.
Hu JL, Todhunter ME, LaBarge MA, Gartner ZJ. PMID: 29263081; PMCID: PMC5748992.
View in:
PubMed Mentions:
39 Fields:
Translation:
HumansAnimalsCells
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Single-cell mechanogenetics using monovalent magnetoplasmonic nanoparticles. Nat Protoc. 2017 Sep; 12(9):1871-1889.
Kim JW, Seo D, Lee JU, Southard KM, Lim Y, Kim D, Gartner ZJ, Jun YW, Cheon J. PMID: 28817122; PMCID: PMC5742362.
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PubMed Mentions:
13 Fields:
Translation:
HumansCells
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Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells. Proc Natl Acad Sci U S A. 2017 08 15; 114(33):8728-8733.
Cole RH, Tang SY, Siltanen CA, Shahi P, Zhang JQ, Poust S, Gartner ZJ, Abate AR. PMID: 28760972; PMCID: PMC5565430.
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PubMed Mentions:
51 Fields:
Translation:
HumansCells
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A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time. Cell. 2017 06 15; 169(7):1357.
Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW. PMID: 28622515.
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PubMed Mentions:
3 Fields:
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Unraveling cell-to-cell signaling networks with chemical biology. Nat Chem Biol. 2017 05 17; 13(6):564-568.
Gartner ZJ, Prescher JA, Lavis LD. PMID: 28514428.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimalsCells
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A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell. 2017 03 23; 169(1):108-119.e20.
Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD. PMID: 28340336; PMCID: PMC6934412.
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PubMed Mentions:
69 Fields:
Translation:
HumansCells
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Dissecting the stem cell niche with organoid models: an engineering-based approach. Development. 2017 03 15; 144(6):998-1007.
Murrow LM, Weber RJ, Gartner ZJ. PMID: 28292846; PMCID: PMC5358107.
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PubMed Mentions:
34 Fields:
Translation:
HumansAnimalsCells
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Non-autonomous cell proliferation in the mammary gland and cancer. Curr Opin Cell Biol. 2017 04; 45:55-61.
Weber RJ, Desai TA, Gartner ZJ. PMID: 28314237; PMCID: PMC8811621.
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PubMed Mentions:
9 Fields:
Translation:
HumansAnimalsCells
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Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding. Sci Rep. 2017 03 14; 7:44447.
Shahi P, Kim SC, Haliburton JR, Gartner ZJ, Abate AR. PMID: 28290550; PMCID: PMC5349531.
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PubMed Mentions:
117 Fields:
Translation:
Humans
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192 Diagnosis and therapy of aggressive breast cancers by targeting urokinase receptor. European Journal of Cancer. 2016 Dec 1; 69:s68.
Harel HE, Liang LS, Brain BS, Gartner GZ, Veer VL, Craik CC. .
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Publisher Site Mentions:
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Effects of cell type and configuration on anabolic and catabolic activity in 3D co-culture of mesenchymal stem cells and nucleus pulposus cells. J Orthop Res. 2017 01; 35(1):61-73.
Ouyang A, Cerchiari AE, Tang X, Liebenberg E, Alliston T, Gartner ZJ, Lotz JC. PMID: 27699833; PMCID: PMC5258652.
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PubMed Mentions:
15 Fields:
Translation:
HumansAnimalsCells
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Rapid Organoid Reconstitution by Chemical Micromolding. ACS Biomater Sci Eng. 2016 Nov 14; 2(11):1851-1855.
Weber RJ, Cerchiari AE, Delannoy LS, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. PMID: 33440521.
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PubMed Mentions:
3 Fields:
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Probing the luminal microenvironment of reconstituted epithelial microtissues. Sci Rep. 2016 09 13; 6:33148.
Cerchiari AE, Samy KE, Todhunter ME, Schlesinger E, Henise J, Rieken C, Gartner ZJ, Desai TA. PMID: 27619235; PMCID: PMC5020616.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Fabrication of 3-D Reconstituted Organoid Arrays by DNA-Programmed Assembly of Cells (DPAC). Curr Protoc Chem Biol. 2016 09 13; 8(3):147-178.
Todhunter ME, Weber RJ, Farlow J, Jee NY, Cerchiari AE, Gartner ZJ. PMID: 27622567; PMCID: PMC5183975.
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PubMed Mentions:
6 Fields:
Translation:
Humans
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A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time. Cell. 2016 Jun 02; 165(6):1507-1518.
Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW. PMID: 27180907; PMCID: PMC4892966.
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PubMed Mentions:
69 Fields:
Translation:
HumansCells
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Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers. Journal of Visualized Experiments. 2016 May 5; (111).
Cole CR, Gartner GZ, Abate AA. .
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Publisher Site Mentions:
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Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers. J Vis Exp. 2016 05 05; (111).
Cole RH, Gartner ZJ, Abate AR. PMID: 27214249; PMCID: PMC4942052.
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PubMed Mentions:
10 Fields:
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Mysteries in a Minimal Genome. ACS Cent Sci. 2016 May 25; 2(5):274-7.
Coyle M, Hu J, Gartner Z. PMID: 27280161; PMCID: PMC4882734.
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PubMed Mentions:
2
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Interrogating cellular fate decisions with high-throughput arrays of multiplexed cellular communities. Nat Commun. 2016 Jan 12; 7:10309.
Chen S, Bremer AW, Scheideler OJ, Na YS, Todhunter ME, Hsiao S, Bomdica PR, Maharbiz MM, Gartner ZJ, Schaffer DV. PMID: 26754526; PMCID: PMC4729920.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimalsCells
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Coupling between apical tension and basal adhesion allow epithelia to collectively sense and respond to substrate topography over long distances. Integr Biol (Camb). 2015 Dec; 7(12):1611-21.
Broaders KE, Cerchiari AE, Gartner ZJ. PMID: 26507156; PMCID: PMC4666816.
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PubMed Mentions:
12 Fields:
Translation:
HumansAnimalsCells
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Programmed synthesis of three-dimensional tissues. Nat Methods. 2015 Oct; 12(10):975-81.
Todhunter ME, Jee NY, Hughes AJ, Coyle MC, Cerchiari A, Farlow J, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. PMID: 26322836; PMCID: PMC4589502.
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PubMed Mentions:
99 Fields:
Translation:
HumansCells
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Compact and modular multicolour fluorescence detector for droplet microfluidics. Lab Chip. 2015 Jul 07; 15(13):2754-8.
Cole RH, de Lange N, Gartner ZJ, Abate AR. PMID: 26032595; PMCID: PMC4505729.
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PubMed Mentions:
10 Fields:
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A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. Proc Natl Acad Sci U S A. 2015 Feb 17; 112(7):2287-92.
Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ. PMID: 25633040; PMCID: PMC4343104.
View in:
PubMed Mentions:
53 Fields:
Translation:
HumansCells
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Formation of spatially and geometrically controlled three-dimensional tissues in soft gels by sacrificial micromolding. Tissue Eng Part C Methods. 2015 Jun; 21(6):541-7.
Cerchiari A, Garbe JC, Todhunter ME, Jee NY, Pinney JR, LaBarge MA, Desai TA, Gartner ZJ. PMID: 25351430; PMCID: PMC4442595.
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PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
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Efficient targeting of fatty-acid modified oligonucleotides to live cell membranes through stepwise assembly. Biomacromolecules. 2014 Dec 08; 15(12):4621-6.
Weber RJ, Liang SI, Selden NS, Desai TA, Gartner ZJ. PMID: 25325667; PMCID: PMC4261982.
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PubMed Mentions:
31 Fields:
Translation:
HumansCells
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Production and targeting of monovalent quantum dots. J Vis Exp. 2014 Oct 23; (92):e52198.
Seo D, Farlow J, Southard K, Jun YW, Gartner ZJ. PMID: 25407345; PMCID: PMC4309134.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Production and Targeting of Monovalent Quantum Dots. Journal of Visualized Experiments. 2014 Oct 23; (92).
Seo SD, Farlow FJ, Southard SK, Jun JY, Gartner GZ. .
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A modular approach for assembling aldehyde-tagged proteins on DNA scaffolds. J Am Chem Soc. 2014 Aug 06; 136(31):10850-3.
Liang SI, McFarland JM, Rabuka D, Gartner ZJ. PMID: 25029632; PMCID: PMC4132959.
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PubMed Mentions:
15 Fields:
Translation:
HumansCells
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Cells: Shaping tissues and organs. Mol Biol Cell. 2014 Mar; 25(6):730.
Rosenblatt J, Gartner Z. PMID: 24626844; PMCID: PMC3952838.
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PubMed Mentions: Fields:
Translation:
HumansAnimalsCells
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Regulating Spatiotemporal Dynamics of Notch Signaling in Live Cells via Magnetoplasmonic Nanoprobes. Biophysical Journal. 2014 Jan 1; 106(2):224a.
Seo SD, Kim KJ, Farlow FJ, Lee LH, Alivisatos AP, Cheon CJ, Gartner GZ, Jun JY. .
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Publisher Site Mentions:
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Formation of targeted monovalent quantum dots by steric exclusion. Nat Methods. 2013 Dec; 10(12):1203-5.
Farlow J, Seo D, Broaders KE, Taylor MJ, Gartner ZJ, Jun YW. PMID: 24122039; PMCID: PMC3968776.
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PubMed Mentions:
36 Fields:
Translation:
HumansCells
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Mycobacterium tuberculosis Rv3406 is a type II alkyl sulfatase capable of sulfate scavenging. PLoS One. 2013; 8(6):e65080.
Sogi KM, Gartner ZJ, Breidenbach MA, Appel MJ, Schelle MW, Bertozzi CR. PMID: 23762287; PMCID: PMC3675115.
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PubMed Mentions:
10 Fields:
Translation:
Cells
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Directing the assembly of spatially organized multicomponent tissues from the bottom up. Trends Cell Biol. 2012 Dec; 22(12):683-91.
Liu JS, Gartner ZJ. PMID: 23067679; PMCID: PMC3505240.
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PubMed Mentions:
22 Fields:
Translation:
HumansAnimalsCells
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Programmed cell-to-cell variability in Ras activity triggers emergent behaviors during mammary epithelial morphogenesis. Cell Rep. 2012 Nov 29; 2(5):1461-70.
Liu JS, Farlow JT, Paulson AK, Labarge MA, Gartner ZJ. PMID: 23041312; PMCID: PMC3634587.
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PubMed Mentions:
22 Fields:
Translation:
HumansAnimalsCells
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Cellular microfabrication: observing intercellular interactions using lithographically-defined DNA capture sequences. Langmuir. 2012 May 29; 28(21):8120-6.
Onoe H, Hsiao SC, Douglas ES, Gartner ZJ, Bertozzi CR, Francis MB, Mathies RA. PMID: 22512362.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimalsCells
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Chemically programmed cell adhesion with membrane-anchored oligonucleotides. J Am Chem Soc. 2012 Jan 18; 134(2):765-8.
Selden NS, Todhunter ME, Jee NY, Liu JS, Broaders KE, Gartner ZJ. PMID: 22176556; PMCID: PMC3280587.
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PubMed Mentions:
50 Fields:
Translation:
HumansAnimalsCells
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Direct cell surface modification with DNA for the capture of primary cells and the investigation of myotube formation on defined patterns. Langmuir. 2009 Jun 16; 25(12):6985-91.
Hsiao SC, Shum BJ, Onoe H, Douglas ES, Gartner ZJ, Mathies RA, Bertozzi CR, Francis MB. PMID: 19505164; PMCID: PMC2812030.
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PubMed Mentions:
50 Fields:
Translation:
HumansCells
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Programmed assembly of 3-dimensional microtissues with defined cellular connectivity. Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4606-10.
Gartner ZJ, Bertozzi CR. PMID: 19273855; PMCID: PMC2660766.
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PubMed Mentions:
94 Fields:
Translation:
HumansAnimalsCells
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Boron nitride nanotubes are noncytotoxic and can be functionalized for interaction with proteins and cells. J Am Chem Soc. 2009 Jan 28; 131(3):890-1.
Chen X, Wu P, Rousseas M, Okawa D, Gartner Z, Zettl A, Bertozzi CR. PMID: 19119844; PMCID: PMC2657038.
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PubMed Mentions:
78 Fields:
Translation:
HumansCells
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Evolutionary approaches for the discovery of functional synthetic small molecules. Pure and Applied Chemistry. 2006 Jan 1; 78(1):1-14.
Gartner GZ. .
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Publisher Site Mentions:
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DNA-templated organic synthesis and selection of a library of macrocycles. Science. 2004 Sep 10; 305(5690):1601-5.
Gartner ZJ, Tse BN, Grubina R, Doyon JB, Snyder TM, Liu DR. PMID: 15319493; PMCID: PMC2814051.
View in:
PubMed Mentions:
111 Fields:
Translation:
Cells
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Directed evolution of ligand dependence: small-molecule-activated protein splicing. Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29):10505-10.
Buskirk AR, Ong YC, Gartner ZJ, Liu DR. PMID: 15247421; PMCID: PMC489967.
View in:
PubMed Mentions:
66 Fields:
Translation:
AnimalsCells
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Translation of DNA into synthetic N-acyloxazolidines. J Am Chem Soc. 2004 Apr 28; 126(16):5090-2.
Li X, Gartner ZJ, Tse BN, Liu DR. PMID: 15099091.
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PubMed Mentions:
8 Fields:
Translation:
Cells
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Two enabling architectures for DNA-templated organic synthesis. Angew Chem Int Ed Engl. 2003 Mar 28; 42(12):1370-5.
Gartner ZJ, Grubina R, Calderone CT, Liu DR. PMID: 12671971.
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PubMed Mentions:
15 Fields:
Translation:
Cells
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Two Enabling Architectures for DNA-Templated Organic Synthesis. Angewandte Chemie. 2003 Mar 28; 115(12):1408-1413.
Gartner GZ, Grubina GR, Calderone CC, Liu LD. .
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Directing Otherwise Incompatible Reactions in a Single Solution by Using DNA-Templated Organic Synthesis. Angewandte Chemie. 2002 Nov 4; 114(21):4278-4282.
Calderone CC, Puckett PJ, Gartner GZ, Liu LD. .
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Publisher Site Mentions:
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Directing otherwise incompatible reactions in a single solution by using DNA-templated organic synthesis. Angew Chem Int Ed Engl. 2002 Nov 04; 41(21):4104-8.
Calderone CT, Puckett JW, Gartner ZJ, Liu DR. PMID: 12412096.
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PubMed Mentions:
7 Fields:
Translation:
Cells
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Multistep small-molecule synthesis programmed by DNA templates. J Am Chem Soc. 2002 Sep 04; 124(35):10304-6.
Gartner ZJ, Kanan MW, Liu DR. PMID: 12197733.
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PubMed Mentions:
24 Fields:
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Expanding the reaction scope of DNA-templated synthesis. Angew Chem Int Ed Engl. 2002 May 17; 41(10):1796-800.
Gartner ZJ, Kanan MW, Liu DR. PMID: 19750721.
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PubMed Mentions:
33 Fields:
Translation:
Cells
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Expanding the Reaction Scope of DNA-Templated Synthesis . Angewandte Chemie. 2002 May 17; 114(10):1874-1878.
Gartner GZ, Kanan KM, Liu LD. .
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Publisher Site Mentions:
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ChemInform Abstract: The Generality of DNA-Templated Synthesis as a Basis for Evolving Non-Natural Small Molecules. ChemInform. 2001 Oct 30; 32(44):no-no.
Gartner GZ, Liu LD. .
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Publisher Site Mentions:
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The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules. J Am Chem Soc. 2001 Jul 18; 123(28):6961-3.
Gartner ZJ, Liu DR. PMID: 11448217; PMCID: PMC2820563.
View in:
PubMed Mentions:
61 Fields:
Translation:
Cells