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Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site
scientific article published on 01 July 1990
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
title
Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site
(English)
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
author
Philip J Farabaugh
series ordinal
2
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
author name string
M F Belcourt
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1
1 reference
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
language of work or name
English
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publication date
1 July 1990
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Europe PubMed Central
PubMed publication ID
2164889
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retrieved
24 September 2019
published in
Cell
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
volume
62
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
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24 September 2019
issue
2
1 reference
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Europe PubMed Central
PubMed publication ID
2164889
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24 September 2019
page(s)
339-352
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Europe PubMed Central
PubMed publication ID
2164889
reference URL
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24 September 2019
cites work
Leaky +1 and −1 frameshift mutations at the same site in a yeast mitochondrial gene
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PubMed
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12 December 2020
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PubMed
reference URL
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12 December 2020
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Yeast tRNALeu(Anticodon U-A-G) translates all six leucine codons in extracts from interferon treated cells
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12 December 2020
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Lysis gene expression of RNA phage MS2 depends on a frameshift during translation of the overlapping coat protein gene
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An effect of codon context on the mistranslation of UGU codons in vitro.
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12 December 2020
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Context effects: Translation of UAG codon by suppressor tRNA is affected by the sequence following UAG in the message
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PubMed
reference URL
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12 December 2020
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
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The influence of codon context on genetic code translation
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12 December 2020
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The nucleotide sequences of copia and copia-related RNA in Drosophila virus-like particles
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12 December 2020
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An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV.
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12 December 2020
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Molecular characterisation of the tyrosine tRNA genes of yeast
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12 December 2020
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Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs
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12 December 2020
based on heuristic
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Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast
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12 December 2020
based on heuristic
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Studies on polynucleotides, lxviii the primary structure of yeast phenylalanine transfer RNA.
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12 December 2020
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E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
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Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
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Effects of surrounding sequence on the suppression of nonsense codons
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
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Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.
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PubMed
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12 December 2020
based on heuristic
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Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting
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PubMed
reference URL
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Expression strategies of the yeast retrotransposon Ty: a short sequence directs ribosomal frameshifting
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The influence of the reading context upon the suppression of nonsense codons
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
tRNAi(met) functions in directing the scanning ribosome to the start site of translation
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Recessive lethality of yeast strains carrying the SUP61 suppressor results from loss of a transfer RNA with a unique decoding function
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ty elements transpose through an RNA intermediate
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A simple method for site-directed mutagenesis using the polymerase chain reaction
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stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The AGG codon is translated slowly in E. coli even at very low expression levels
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Single turnover kinetic studies of guanosine triphosphate hydrolysis and peptide formation in the elongation factor Tu-dependent binding of aminoacyl-tRNA to Escherichia coli ribosomes
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Evidence for transposition of dispersed repetitive DNA families in yeast
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Only one of two closely related yeast suppressor tRNA genes contains an intervening sequence
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A GAL10-CYC1 hybrid yeast promoter identifies the GAL4 regulatory region as an upstream site
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
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inferred from PubMed ID database lookup
Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements
1 reference
stated in
PubMed
reference URL
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12 December 2020
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inferred from PubMed ID database lookup
Characterization of ribosomal frameshifting in HIV-1 gag-pol expression
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Expression of peptide chain release factor 2 requires high-efficiency frameshift.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Delta sequences in the 5' non-coding region of yeast tRNA genes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Codon context effects in missense suppression
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Transformation of intact yeast cells treated with alkali cations
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Frameshift suppression in aminoacyl-tRNA limited cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Peptide chain termination. V. The role of release factors in mRNA terminator codon recognition
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The functions and relationships of Ty-VLP proteins in yeast reflect those of mammalian retroviral proteins
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
HIV expression strategies: ribosomal frameshifting is directed by a short sequence in both mammalian and yeast systems
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Molecular model of ribosome frameshifting
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
21 β-Galactosidase gene fusions for analyzing gene expression in Escherichia coli and yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A simple and efficient procedure for saturation mutagenesis using mixed oligodeoxynucleotides
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
DNA sequencing with chain-terminating inhibitors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Complete nucleotide sequence of a milk-transmitted mouse mammary tumor virus: two frameshift suppression events are required for translation of gag and pol.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Codon usage tabulated from the GenBank Genetic Sequence Data
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Structure of yeast phenylalanine-tRNA genes: an intervening DNA segment within the region coding for the tRNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Codon recognition rules in yeast mitochondria
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Two efficient ribosomal frameshifting events are required for synthesis of mouse mammary tumor virus gag-related polyproteins
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The sequence of a large L1Md element reveals a tandemly repeated 5' end and several features found in retrotransposons
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Different pattern of codon recognition by mammalian mitochondrial tRNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Overlapping genes in rna phage: a new protein implicated in lysis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Enhancer and silencerlike sites within the transcribed portion of a Ty2 transposable element of Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Translation of the sequence AGG-AGG yields 50% ribosomal frameshift
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty1.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ty element transposition: reverse transcriptase and virus-like particles
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The nucleotide sequence of the HIS4 region of yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Yeast tRNALeuUAG. Purification, Properties and Determination of the Nucleotide Sequence by Radioactive Derivative Methods
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/2164889
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/0092-8674(90)90371-K
1 reference
stated in
Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
PMC publication ID
7133245
0 references
PubMed publication ID
2164889
1 reference
stated in
Europe PubMed Central
PubMed publication ID
2164889
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2164889%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 September 2019
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