(Q46892266)

26 December 2017

http://europepmc.org/abstract/MED/18024567

title

Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana (English)

1 reference

26 December 2017

http://europepmc.org/abstract/MED/18024567

0 references

2

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26 December 2017

http://europepmc.org/abstract/MED/18024567

Ian Small

object named as

Ian Small

5

0 references

James Whelan

object named as

James Whelan

6

0 references

author name string

Reena Narsai

1

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26 December 2017

http://europepmc.org/abstract/MED/18024567

A Harvey Millar

3

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26 December 2017

http://europepmc.org/abstract/MED/18024567

Nicholas O'Toole

4

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26 December 2017

http://europepmc.org/abstract/MED/18024567

publication date

16 November 2007

1 reference

26 December 2017

http://europepmc.org/abstract/MED/18024567

number of pages

19

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inferred from page(s)

published in

The Plant Cell

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26 December 2017

http://europepmc.org/abstract/MED/18024567

volume

19

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26 December 2017

http://europepmc.org/abstract/MED/18024567

issue

11

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26 December 2017

http://europepmc.org/abstract/MED/18024567

page(s)

3418-3436

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26 December 2017

http://europepmc.org/abstract/MED/18024567

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26 August 2018

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26 August 2018

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26 August 2018

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A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks

26 August 2018

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Cell-cycle control of gene expression in budding and fission yeast

26 August 2018

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Control of mRNA stability in eukaryotes

26 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis.

26 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression

26 August 2018

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Regulation of gene expression by light.

26 August 2018

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Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway.

26 August 2018

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Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

The ELAV RNA-stability factor HuR binds the 5'-untranslated region of the human IGF-IR transcript and differentially represses cap-dependent and IRES-mediated translation

26 August 2018

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Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells

26 August 2018

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Differences in the translation efficiency and mRNA stability mediated by 5'-UTR splice variants of human SP-A1 and SP-A2 genes

26 August 2018

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Computational prediction of miRNAs in Arabidopsis thaliana

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Inparanoid: a comprehensive database of eukaryotic orthologs

26 August 2018

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The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences

26 August 2018

1 reference

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Transcription, translation, degradation, and circadian clock

26 August 2018

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Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

26 August 2018

1 reference

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Regulation of disease resistance pathways by AP2/ERF transcription factors.

26 August 2018

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

26 August 2018

1 reference

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Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors

26 August 2018

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Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes

26 August 2018

1 reference

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Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development

26 August 2018

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Regulation of alpha1(I) collagen messenger RNA decay by interactions with alphaCP at the 3'-untranslated region

26 August 2018

1 reference

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Genetic regulatory mechanisms in the synthesis of proteins

26 August 2018

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Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes

26 August 2018

1 reference

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A quantitative analysis of intron effects on mammalian gene expression

26 August 2018

1 reference

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Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae

26 August 2018

1 reference

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Prediction of plant microRNA targets

26 August 2018

1 reference

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Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes

26 August 2018

1 reference

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Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

26 August 2018

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26 August 2018

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26 August 2018

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Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity

26 August 2018

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Precision and functional specificity in mRNA decay

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

26 August 2018

1 reference

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Identifying regulatory networks by combinatorial analysis of promoter elements

26 August 2018

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Introns and their positions affect the translational activity of mRNA in plant cells

26 August 2018

1 reference

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Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

26 August 2018

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RNA stabilization by the AU-rich element binding protein, HuR, an ELAV protein

26 August 2018

1 reference

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Control of mRNA stability in higher plants

26 August 2018

1 reference

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A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation

26 August 2018

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DST sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco

26 August 2018

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The effect of sequences with high AU content on mRNA stability in tobacco

26 August 2018

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Turnover mechanisms of the stable yeast PGK1 mRNA

26 August 2018

1 reference

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No end yet to messenger RNA 3' processing!

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

mRNA stability in mammalian cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174890

Context analysis of termination codons in mRNA that are recognized by plant NMD

26 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18024567

12 December 2020

inferred from PubMed ID database lookup

Microcomputer-assisted kinetic modeling of mammalian gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18024567

12 December 2020

inferred from PubMed ID database lookup

A near-upstream element in a plant polyadenylation signal consists of more than six nucleotides

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18024567

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1105/TPC.107.055046

1 reference

26 December 2017

http://europepmc.org/abstract/MED/18024567

PMC publication ID

2174890

0 references

1 reference

26 December 2017