(Q46820099)

25 December 2017

http://europepmc.org/abstract/MED/11948781

title

Simulations of ion current in realistic models of ion channels: the KcsA potassium channel (English)

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

4

Warshel A

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

author name string

Burykin A

series ordinal

1

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

Schutz CN

series ordinal

2

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

Villá J

series ordinal

3

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

language of work or name

English

0 references

publication date

1 May 2002

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

published in

Proteins

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25 December 2017

http://europepmc.org/abstract/MED/11948781

volume

47

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25 December 2017

http://europepmc.org/abstract/MED/11948781

issue

3

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25 December 2017

http://europepmc.org/abstract/MED/11948781

page(s)

265-280

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25 December 2017

http://europepmc.org/abstract/MED/11948781

cites work

Ion transport through pores: A rate-theory analysis

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Conduction and selectivity in potassium channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Stochastic theory of ion movement in channels with single-ion occupancy. Application to sodium permeation of gramicidin channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Ion-water and ion-polypeptide correlations in a gramicidin-like channel. A molecular dynamics study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Energetics of ion permeation through membrane channels. Solvation of Na+ by gramicidin A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Sodium in gramicidin: an example of a permion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Dynamics of biochemical and biophysical reactions: insight from computer simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

KcsA: it's a potassium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Gating of voltage-dependent potassium channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Ion permeation mechanism of the potassium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

K(+)/Na(+) selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Side-chain ionization states in a potassium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Molecular dynamics study of the KcsA potassium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Interpretation of biological ion channel flux data--reaction-rate versus continuum theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Permeation of ions across the potassium channel: Brownian dynamics studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

From structure to function in open ionic channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Dipoles localized at helix termini of proteins stabilize charges

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Conversion of light energy to electrostatic energy in the proton pump of Halobacterium halobium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

What are the dielectric "constants" of proteins and how to validate electrostatic models?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Energetics of ion conduction through the K+ channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Calculations of antibody-antigen interactions: microscopic and semi-microscopic evaluation of the free energies of binding of phosphorylcholine analogs to McPC603

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Electrostatic effects in macromolecules: fundamental concepts and practical modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Macroscopic models for studies of electrostatic interactions in proteins: limitations and applicability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

The fluctuation-dissipation theorem

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

A computational study of ion binding and protonation states in the KcsA potassium channel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

The effect of protein relaxation on charge-charge interactions and dielectric constants of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Potassium channels: life in the post-structural world

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Single streptomyces lividans K(+) channels: functional asymmetries and sidedness of proton activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Structural rearrangements underlying K+-channel activation gating

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Energetic optimization of ion conduction rate by the K+ selectivity filter

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Brownian dynamics simulation of ion flow through porin channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

How electrolyte shielding influences the electrical potential in transmembrane ion channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Hierarchical approach to predicting permeation in ion channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

21 January 2018

Ionic hopping defended

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10106

Free energy of charges in solvated proteins: microscopic calculations using a reversible charging process

21 January 2018

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PROT.10106

Ion-membrane interactions as structural forces

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PROT.10106

Identifiers

DOI

10.1002/PROT.10106

1 reference

25 December 2017

http://europepmc.org/abstract/MED/11948781

1 reference

25 December 2017