(Q42252373)

19 October 2017

A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling (English)

1 reference

19 October 2017

1 reference

Joshua C Black

7

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Michael Carey

object named as

Michael Carey

9

0 references

author name string

Vladimir R Ramirez-Carrozzi

1

1 reference

19 October 2017

Daniel Braas

2

1 reference

19 October 2017

Dev M Bhatt

3

1 reference

19 October 2017

Christine S Cheng

4

1 reference

19 October 2017

Christine Hong

5

1 reference

19 October 2017

Kevin R Doty

6

1 reference

19 October 2017

Alexander Hoffmann

8

1 reference

19 October 2017

Stephen T Smale

10

1 reference

19 October 2017

language of work or name

English

0 references

publication date

1 July 2009

1 reference

19 October 2017

1 reference

19 October 2017

138

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19 October 2017

1

1 reference

19 October 2017

114-128

1 reference

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

DNA methylation landscapes: provocative insights from epigenomics

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Two strategies for gene regulation by promoter nucleosomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Nucleosome organization in the Drosophila genome.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Dynamic regulation of nucleosome positioning in the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

High-resolution mapping and characterization of open chromatin across the genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

A chromatin landmark and transcription initiation at most promoters in human cells

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Transcriptional regulation by chromatin disassembly and reassembly.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Interleukin-6: discovery of a pleiotropic cytokine

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

A genomic code for nucleosome positioning

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Genome-scale identification of nucleosome positions in S. cerevisiae

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

The chromatin-remodeling BAF complex mediates cellular antiviral activities by promoter priming

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

IRF3 mediates a TLR3/TLR4-specific antiviral gene program

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Chromatin-remodelling factor BRG1 selectively activates a subset of interferon-alpha-inducible genes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Maximal induction of a subset of interferon target genes requires the chromatin-remodeling activity of the BAF complex

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Rapid and selective remodeling of a positioned nucleosome during the induction of IL-12 p40 transcription

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

CpG islands in vertebrate genomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Primary response genes induced by growth factors and tumor promoters

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Sequence periodicities in chicken nucleosome core DNA.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

DNA bending and its relation to nucleosome positioning.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

High-throughput mapping of the chromatin structure of human promoters.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Histone-DNA binding free energy cannot be measured in dilution-driven dissociation experiments

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712736

Characterization of nucleosome core particles containing histone proteins made in bacteria

17 August 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19596239

12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19596239

12 December 2020

https://pubmed.ncbi.nlm.nih.gov/19596239

1 reference

12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

https://pubmed.ncbi.nlm.nih.gov/19596239

12 December 2020

Computational identification of promoters and first exons in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19596239

12 December 2020

10.1016/J.CELL.2009.04.020

Identifiers

DOI

1 reference

19 October 2017

1 reference

19 October 2017

PubMed publication ID

19596239

1 reference