(Q41465976)

1 October 2017

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title

Photocross-linking of nucleic acids to associated proteins (English)

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1 October 2017

Meisenheimer KM

1

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1 October 2017

Koch TH

series ordinal

2

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1 October 2017

publication date

1 January 1997

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Critical Reviews in Biochemistry and Molecular Biology

1 October 2017

published in

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1 October 2017

volume

32

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1 October 2017

issue

2

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1 October 2017

page(s)

101-140

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Direct tRNA-protein interactions in ribosomal complexes

1 October 2017

cites work

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photochemical cross-linking assay for DNA tracking by replication proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

21 January 2018

Photoaffinity labeling

1 reference

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Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinking

21 January 2018

1 reference

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Induction of polynucleotide-protein cross-linkages by ultraviolet irradiation. Peculiarities of the high-intensity laser pulse irradiation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Tyrosine 27 of the specificity polypeptide of EcoKI can be UV crosslinked to a bromodeoxyuridine-substituted DNA target sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photolysis of phosphodiester bonds in plasmid DNA by high intensity UV laser irradiation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Synthesis and use of azido photoaffinity analogs of adenine and guanine nucleotides

21 January 2018

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Conformation and structural fluctuations of a 218 nucleotides long rRNA fragment: 4-thiouridine as an intrinsic photolabelling probe

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photochemical coupling of 5-bromouracil to tryptophan, tyrosine and histidine, peptide-like derivatives in aqueous fluid solution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Orientation of the LexA DNA-binding motif on operator DNA as inferred from cysteine-mediated phenyl azide crosslinking

21 January 2018

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Interaction of 5-fluoro-4-thio-2'-deoxyuridine 5'-phosphate with mammalian tumour thymidylate synthase: role of the pyrimidine N(3)-H dissociation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Synthesis and biological properties of 5-azido-2'-deoxyuridine 5'-triphosphate, a photoactive nucleotide suitable for making light-sensitive DNA.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409239709108550

5-Azido-2'-deoxyuridine 5'-triphosphate: a photoaffinity-labeling reagent and tool for the enzymatic synthesis of photoactive DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

4-Thiouridine photosensitized RNA-protein crosslinking in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photochemistry of DNA and related biomolecules: quantum yields and consequences of photoionization

21 January 2018

1 reference

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A specific, UV-induced RNA-protein cross-link using 5-bromouridine-substituted RNA.

21 January 2018

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New RNA-protein crosslinks in domains 1 and 2 of E. coli 30S ribosomal subunits obtained by means of an intrinsic photoaffinity probe

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

The L protein of vesicular stomatitis virus transcription complexes is specifically photolabelled by 5-azido-uridine 5'-triphosphate, an analogue of the RNA polymerase substrate uridine 5'-triphosphate

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Synthesis and characterization of a new photocrosslinking CTP analog and its use in photoaffinity labelingE.coliand T7 RNA polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Laser crosslinking of E. coli RNA polymerase and T7 DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Preparation of probe-modified RNA with 5-mercapto-UTP for analysis of protein-RNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Telomeric protein-DNA point contacts identified by photo-cross-linking using 5-bromodeoxyuridine

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Identification of the DNA-interacting sites of proteins: microsequencing of the peptides cross-linked to 5-bromouracil substituted DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Determination of the DNA-interacting region of the archaebacterial chromosomal protein MC1. Photocrosslinks with 5-bromouracil-substituted DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Mapping of the active site of T7 RNA polymerase with 8-azidoATP.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Sequence-specificity of the alkali-sensitive lesions induced in DNA by high-intensity ultraviolet laser radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photo-induced crosslinking of histones H3 and H1 to DNA in deoxyribonucleoprotein: implication in studying histone-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Probing the protein-DNA contacts of a yeast RNA polymerase III transcription complex in a crude extract: solid phase synthesis of DNA photoaffinity probes containing a novel photoreactive deoxycytidine analog

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Sequence-specific recognition, photocrosslinking and cleavage of the DNA double helix by an oligo-[alpha]-thymidylate covalently linked to an azidoproflavine derivative

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Evidence for a non-alpha-helical DNA-binding motif in the Rel homology region

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photocross-links between single-stranded DNA and Escherichia coli RecA protein map to loops L1 (amino acid residues 157-164) and L2 (amino acid residues 195-209).

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Identification of nucleotide-binding regions in the chaperonin proteins GroEL and GroES.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

High yield photocrosslinking of a 5-iodocytidine (IC) substituted RNA to its associated protein

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Contacts between the lac repressor and the thymines in the lac operator

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Determination of the orientation of a DNA binding motif in a protein-DNA complex by photocrosslinking

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Sequence-specific binding and photocrosslinking of alpha and beta oligodeoxynucleotides to the major groove of DNA via triple-helix formation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

2,8-Diazido-ATP--a short-length bifunctional photoaffinity label for photoaffinity cross-linking of a stable F1 in ATP synthase (from thermophilic bacteria PS3).

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Synthesis of uridine phosphoramidite analogs: reagents for site-specific incorporation of photoreactive sites into RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photoreactions of thymine and thymidine with N-acetyltyrosine

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Ring-opening photoreactions of cytosine and 5-methylcytosine with aliphatic alcohols

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Ring opening photoreactions of 5-bromouracil and 5-bromo-2'-deoxyuridine with selected alkylamines

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Site-specific RNA crosslinking with 4-thiouridine

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Binding interactions between yeast tRNA ligase and a precursor transfer ribonucleic acid containing two photoreactive uridine analogues.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Folding of DNA substrate-hairpin ribozyme domains: use of deoxy 4-thiouridine as an intrinsic photolabel

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

25 Identification of amino acid residues at interface of protein—Nucleic acid complexes by photochemical cross-linking

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Photocrosslinking of 5-Iodouracil-Substituted RNA and DNA to Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

An RNA-protein contact determined by 5-bromouridine substitution, photocrosslinking and sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Recombinant photoreactive tRNA molecules as probes for cross-linking studies

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Specific photocrosslinking of DNA-protein complexes: identification of contacts between integration host factor and its target DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

A novel approach to introduce site-directed specific cross-links within RNA-protein complexes. Application to the Escherichia coli threonyl-tRNA synthetase/translational operator complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

Crystal structure of an RNA bacteriophage coat protein–operator complex

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239709108550

10.3109/10409239709108550

21 January 2018

Identifiers

DOI

1 reference

1 October 2017

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