(Q39920083)

15 September 2017

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences (English)

1 reference

protein-protein interaction

15 September 2017

1 reference

Yungki Park

1

1 reference

15 September 2017

14 December 2009

1 reference

15 September 2017

1 reference

15 September 2017

10

1 reference

15 September 2017

419

1 reference

Creative Commons Attribution 2.0 Generic

15 September 2017

start time

1 December 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains

22 September 2017

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22 September 2017

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22 September 2017

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Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences.

22 September 2017

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An in vivo map of the yeast protein interactome

22 September 2017

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22 September 2017

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A map of human protein interactions derived from co-expression of human mRNAs and their orthologs

22 September 2017

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Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences

22 September 2017

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Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset

22 September 2017

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High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

22 September 2017

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A new computational approach to analyze human protein complexes and predict novel protein interactions.

22 September 2017

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Structure-templated predictions of novel protein interactions from sequence information

22 September 2017

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InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale

22 September 2017

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Using structural motif descriptors for sequence-based binding site prediction

22 September 2017

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A domain-based approach to predict protein-protein interactions

22 September 2017

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Predicting protein-protein interactions based only on sequences information

22 September 2017

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Network-based prediction of protein function

22 September 2017

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Predicting domain-domain interactions using a parsimony approach

22 September 2017

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The many faces of protein-protein interactions: A compendium of interface geometry

22 September 2017

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PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

22 September 2017

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

22 September 2017

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An integrated approach to the prediction of domain-domain interactions

22 September 2017

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Choosing negative examples for the prediction of protein-protein interactions

22 September 2017

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Predicting protein-protein interactions from sequences in a hybridization space

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Proteome survey reveals modularity of the yeast cell machinery

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Inferring protein domain interactions from databases of interacting proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Towards a proteome-scale map of the human protein–protein interaction network

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

A human protein-protein interaction network: a resource for annotating the proteome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Large-scale identification of yeast integral membrane protein interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Kernel methods for predicting protein-protein interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Inferring protein-protein interactions through high-throughput interaction data from diverse organisms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

A map of the interactome network of the metazoan C. elegans

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

The Database of Interacting Proteins: 2004 update

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

A protein interaction map of Drosophila melanogaster

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Development of human protein reference database as an initial platform for approaching systems biology in humans

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Inferring domain-domain interactions from protein-protein interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Interrogating protein interaction networks through structural biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

A comprehensive two-hybrid analysis to explore the yeast protein interactome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Gene ontology: tool for the unification of biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Protein interaction maps for complete genomes based on gene fusion events

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Detecting protein function and protein-protein interactions from genome sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Conservation of gene order: a fingerprint of proteins that physically interact

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Predicting protein--protein interactions from primary structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Co-evolution of proteins with their interaction partners

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

An integrative approach for predicting interactions of protein regions

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Prediction of protein-protein interactions using random decision forest framework

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Statistical analysis of domains in interacting protein pairs

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Predicting protein-protein interactions using signature products

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Learning to predict protein-protein interactions from protein sequences

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Integrative approach for computationally inferring protein domain interactions

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

Protein-protein interaction map inference using interacting domain profile pairs

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803199

20 August 2018

Identifiers

DOI

10.1186/1471-2105-10-419

1 reference

15 September 2017

journals/bmcbi/Park09

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

2803199

15 September 2017

PubMed publication ID

20003442

1 reference

PMC publication ID

2803199