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Translocation and gross deletion breakpoints in human inherited disease and cancer I: Nucleotide composition and recombination-associated motifs

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Europe PubMed Central

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2 September 2017

Translocation and gross deletion breakpoints in human inherited disease and cancer I: Nucleotide composition and recombination-associated motifs (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

David N. Cooper

5

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Nadia Chuzhanova

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Nadia Chuzhanova

2

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Michael Krawczak

3

object named as

Michael Krawczak

1 reference

Europe PubMed Central

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2 September 2017

author name string

Shaun S Abeysinghe

1

1 reference

Europe PubMed Central

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2 September 2017

Edward V Ball

4

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Europe PubMed Central

PubMed publication ID

2 September 2017

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1 September 2003

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Europe PubMed Central

PubMed publication ID

2 September 2017

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Europe PubMed Central

PubMed publication ID

2 September 2017

22

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Europe PubMed Central

PubMed publication ID

2 September 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

229-244

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Unusual sequence element found at the end of an amplicon

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Structures of homopurine-homopyrimidine tract in superhelical DNA.

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The t(11;14)(p15;q11) in a T-cell acute lymphoblastic leukemia cell line activates multiple transcripts, including Ttg-1, a gene encoding a potential zinc finger protein

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21 January 2018

The Z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture

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Chromosome breakage in the Prader-Willi and Angelman syndromes involves recombination between large, transcribed repeats at proximal and distal breakpoints

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Site-specific deletions involving the tal-1 and sil genes are restricted to cells of the T cell receptor alpha/beta lineage: T cell receptor delta gene deletion mechanism affects multiple genes.

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Effects of poly[d(pGpT).d(pApC)] and poly[d(pCpG).d(pCpG)] repeats on homologous recombination in somatic cells

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Topoisomerase-I- and Alu-mediated genomic deletions of the APC gene in familial adenomatous polyposis

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Translin recognition site sequences flank chromosome translocation breakpoints in alveolar rhabdomyosarcoma cell lines

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Translocation and gross deletion breakpoints in human inherited disease and cancer II: Potential involvement of repetitive sequence elements in secondary structure formation between DNA ends

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DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences

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Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization

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Two novel types of contiguous gene deletion of the AVPR2 and ARHGAP4 genes in unrelated Japanese kindreds with nephrogenic diabetes insipidus.

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An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: VH, D and JH.

1 reference

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A common molecular basis for rearrangement disorders on chromosome 22q11

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AT-rich palindromes mediate the constitutional t(11;22) translocation.

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A recombination hotspot in the LTR of a mouse retrotransposon identified in an in vitro system

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1 reference

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Effect of Z-DNA on nucleosome placement

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1 reference

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1 reference

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1 reference

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1 reference

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7 January 2021

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1 reference

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7 January 2021

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1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

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1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

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1 reference

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7 January 2021

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1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Recombination hotspot associated factors specifically recognize novel target sequences at the site of interchromosomal rearrangements in T-ALL patients with t(8;14)(q24;q11) and t(1;14)(p32;q11)

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

The translin ring specifically recognizes DNA ends at recombination hot spots in the human genome

1 reference

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7 January 2021

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Rearrangement of immunoglobulin gamma 1-chain gene and mechanism for heavy-chain class switch

1 reference

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7 January 2021

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Genetic recombination in a chromosomal translocation t(2;8)(p11;q24) of a Burkitt's lymphoma cell line, KOBK101.

1 reference

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7 January 2021

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The second case of a t(17;22) in a family with neurofibromatosis type 1: sequence analysis of the breakpoint regions

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Target specificity of immunoglobulin class switch recombination is not determined by nucleotide sequences of S regions

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Prevalent involvement of illegitimate V(D)J recombination in chromosome 9p21 deletions in lymphoid leukemia

1 reference

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7 January 2021

based on heuristic

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Recombination between an expressed immunoglobulin heavy-chain gene and a germline variable gene segment in a Ly 1+ B-cell lymphoma

1 reference

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7 January 2021

based on heuristic

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The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Initiation of genetic recombination and recombination-dependent replication

1 reference

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7 January 2021

based on heuristic

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3D Structure of the human genome: order in randomness

1 reference

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7 January 2021

based on heuristic

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Gene deletions causing human genetic disease: mechanisms of mutagenesis and the role of the local DNA sequence environment

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

The human minisatellite consensus at breakpoints of oncogene translocations

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Long AT-rich palindromes and the constitutional t(11;22) breakpoint

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

(dT-dC)n and (dG-dA)n tracts arrest single stranded DNA replication in vitro

1 reference

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7 January 2021

based on heuristic

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Targeted transposition by the V(D)J recombinase

1 reference

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7 January 2021

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A stable interaction between separated pyrimidine.purine tracts in circular DNA.

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Supercoiling of the DNA template during transcription

1 reference

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7 January 2021

based on heuristic

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TSC1 and TSC2 deletions differ in size, preference for recombinatorial sequences, and location within the gene

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Recombination hotspot in NF1 microdeletion patients

1 reference

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7 January 2021

based on heuristic

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Near-precise interchromosomal recombination and functional DNA topoisomerase II cleavage sites at MLL and AF-4 genomic breakpoints in treatment-related acute lymphoblastic leukemia with t(4;11) translocation

1 reference

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7 January 2021

based on heuristic

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Molecular characterization of the t(10;14) translocation breakpoints in T-cell acute lymphoblastic leukemia: further evidence for illegitimate physiological recombination

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

S1 nuclease hypersensitive sites in an oligopurine/oligopyrimidine DNA from the t(10;14) breakpoint cluster region

1 reference

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7 January 2021

based on heuristic

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Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits

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7 January 2021

based on heuristic

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A pH-dependent structural transition in the homopurine-homopyrimidine tract in superhelical DNA

1 reference

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7 January 2021

based on heuristic

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Is gene deletion in eukaryotes sequence-dependent? A study of nine deletion junctions and nineteen other deletion breakpoints in intron 7 of the human dystrophin gene.

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

GT repeats are associated with recombination on human chromosome 22.

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

V(D)J-mediated translocations in lymphoid neoplasms: a functional assessment of genomic instability by cryptic sites.

1 reference

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7 January 2021

based on heuristic

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Recurrence of OTT-MAL fusion in t(1;22) of infant AML-M7.

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Replication fork arrest and DNA recombination

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Chromosomal illegitimate recombination in mammalian cells is associated with intrinsically bent DNA elements

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Cancer-specific chromosome alterations in the constitutive fragile region FRA3B.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA H form requires a homopurine-homopyrimidine mirror repeat.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

A breakpoint map of recurrent chromosomal rearrangements in human neoplasia

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Nucleotide sequence analysis of human hypoxanthine phosphoribosyltransferase (HPRT) gene deletions

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Precise Spatial Positioning of Chromosomes During Prometaphase: Evidence for Chromosomal Order

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Analysis of 22 deletion breakpoints in dystrophin intron 49.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

(AGCTG) (AGCTG) (AGCTG) (GGGTG) as the primordial sequence of intergenic spacers: the role in immunoglobulin class switch

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Sequence analysis of deletion mutations at the HPRT locus of human T-lymphocytes: association of a palindromic structure with a breakpoint cluster in exon 2

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

A deletion distinct from the classical homologous recombination of juvenile nephronophthisis type 1 (NPH1) allows exact molecular definition of deletion breakpoints

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Characteristic sequence motifs at the breakpoints of the hybrid genes FUS/CHOP, EWS/CHOP and FUS/ERG in myxoid liposarcoma and acute myeloid leukemia

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Genomic characterization of MOZ/CBP and CBP/MOZ chimeras in acute myeloid leukemia suggests the involvement of a damage-repair mechanism in the origin of the t(8;16)(p11;p13).

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Meiotic recombination hot spots and cold spots

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Mechanisms of overlap formation in nonhomologous DNA end joining

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Mechanisms of DNA double-strand break repair and their potential to induce chromosomal aberrations

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Deletion/insertion mutation that causes biotinidase deficiency may result from the formation of a quasipalindromic structure

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Recombination hot spots and human disease

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Human immunoglobulin heavy chain genes: evolutionary comparisons of C mu, C delta and C gamma genes and associated switch sequences

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Chromosomal translocations in human cancer.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Analysis of the V(D)J recombination efficiency at lymphoid chromosomal translocation breakpoints

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Modulated binding of SATB1, a matrix attachment region protein, to the AT-rich sequence flanking the major breakpoint region of BCL2.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

A recombination hotspot responsible for two inherited peripheral neuropathies is located near a mariner transposon-like element.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Coupled homologous and nonhomologous repair of a double-strand break preserves genomic integrity in mammalian cells

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Antiparallel, intramolecular triplex DNA stimulates homologous recombination in human cells

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

One short well conserved region of Alu-sequences is involved in human gene rearrangements and has homology with prokaryotic chi.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Consequences of chromosomal abnormalities in tumor development.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Drosophila topoisomerase II double-strand DNA cleavage: analysis of DNA sequence homology at the cleavage site

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Molecular characterization of the genomic breakpoint junction in the t(11;18) (q21;q21) translocation of a gastric MALT lymphoma

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Multiple myeloma: illegitimate switch recombinations and their relation to chromosomal translocations

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Mosaicism of a microdeletion of 486 bp involving the CGG repeat of the FMR1 gene due to misalignment of GTT tandem repeats at chi-like elements flanking both breakpoints and a full mutation

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Translin binding to DNA: recruitment through DNA ends and consequent conformational transitions

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Immunoglobulin class switching

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

MLL-SEPTIN6 fusion recurs in novel translocation of chromosomes 3, X, and 11 in infant acute myelomonocytic leukaemia and in t(X;11) in infant acute myeloid leukaemia, and MLL genomic breakpoint in complex MLL-SEPTIN6 rearrangement is a DNA topoisom

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Chi hotspots of generalized recombination

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Eukaryotic topoisomerase II preferentially cleaves alternating purine-pyrimidine repeats

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

A consensus sequence for cleavage by vertebrate DNA topoisomerase II.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Molecular analysis of bcl-1/IgH junctional sequences in mantle cell lymphoma: potential mechanism of the t(11;14) chromosomal translocation

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Genome architecture, rearrangements and genomic disorders

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Molecular analysis of DNA junctions produced by illegitimate recombination in human cells

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Gene organization and recombinational hotspots in the murine major histocompatibility complex

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Scaffold-associated regions in the human type I interferon gene cluster on the short arm of chromosome 9.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA structural properties of AF9 are similar to MLL and could act as recombination hot spots resulting in MLL/AF9 translocations and leukemogenesis

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Palindromic but not G-rich sequences are targets of class switch recombination

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA rearrangements in human follicular lymphoma can involve the 5' or the 3' region of the bcl-2 gene

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Topoisomerase I and II consensus sequences in a 17-kb deletion junction of the COL4A5 and COL4A6 genes and immunohistochemical analysis of esophageal leiomyomatosis associated with Alport syndrome

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Chromosomal stability and the DNA double-stranded break connection

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Replication slippage involves DNA polymerase pausing and dissociation

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Characterization of the translocation breakpoint sequences of two DEK-CAN fusion genes present in t(6;9) acute myeloid leukemia and a SET-CAN fusion gene found in a case of acute undifferentiated leukemia

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

The role of palindromic and non-palindromic sequences in arresting DNA synthesis in vitro and in Vivo

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Site of unequal sister chromatid exchange contains a potential Z-DNA-forming tract

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

BCL2 oncogene translocation is mediated by a chi-like consensus

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Chromosomal translocations cause deregulated BCL6 expression by promoter substitution in B cell lymphoma.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Comparison of human genetic and sequence-based physical maps

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Immunoglobulin class switch recombination machinery: progress and challenges

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Genomic DNA breakpoints in AML1/RUNX1 and ETO cluster with topoisomerase II DNA cleavage and DNase I hypersensitive sites in t(8;21) leukemia.

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Chromosome translocation based on illegitimate recombination in human tumors

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.10254

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1002/HUMU.10254

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

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