(Q38309696)

2 September 2017

title

Technologies to probe functions and mechanisms of long noncoding RNAs (English)

1 reference

2 September 2017

Ci Chu

1

1 reference

2 September 2017

Robert C Spitale

series ordinal

2

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2 September 2017

Howard Y Chang

series ordinal

3

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2 September 2017

publication date

1 January 2015

1 reference

Nature Structural & Molecular Biology

2 September 2017

published in

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2 September 2017

volume

22

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2 September 2017

issue

1

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2 September 2017

page(s)

29-35

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Long noncoding RNAs: fresh perspectives into the RNA world

2 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Long noncoding RNAs: cellular address codes in development and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Genome regulation by long noncoding RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The genomic binding sites of a noncoding RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Fifty years of X-inactivation research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Brd4 and JMJD6-associated anti-pause enhancers in regulation of transcriptional pause release

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

KSHV PAN RNA associates with demethylases UTX and JMJD3 to activate lytic replication through a physical interaction with the virus genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The long non-coding RNA Paupar regulates the expression of both local and distal genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Epigenetic licensing of germline gene expression by maternal RNA in C. elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Association of Argonaute proteins and microRNAs can occur after cell lysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

One-step affinity purification protocol for human telomerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Sequence-specific inhibition of small RNA function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Purification of proteins associated with specific genomic Loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Quantification in proteomics through stable isotope coding: a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The yeast Rab GTPase Ypt1 modulates unfolded protein response dynamics by regulating the stability of HAC1 RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Control of somatic tissue differentiation by the long non-coding RNA TINCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The matrix protein hnRNP U is required for chromosomal localization of Xist RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Nuclease footprint analyses of the interactions between RNase P ribozyme and a model mRNA substrate

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

DMS footprinting of structured RNAs and RNA-protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Defining the inside and outside of a catalytic RNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

RNA SHAPE analysis in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Long noncoding RNA as modular scaffold of histone modification complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Exploring RNA structural codes with SHAPE chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Landscape and variation of RNA secondary structure across the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Genome-wide measurement of RNA folding energies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Genome-wide measurement of RNA secondary structure in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Transcriptome-wide identification of RNA binding sites by CLIP-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Systematic reconstruction of RNA functional motifs with high-throughput microfluidics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

RNA Bind-n-Seq: quantitative assessment of the sequence and structural binding specificity of RNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Imaging individual mRNA molecules using multiple singly labeled probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Quantifying RNA-protein interactions in situ using modified-MTRIPs and proximity ligation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Single-cell in situ RNA profiling by sequential hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Development and applications of CRISPR-Cas9 for genome engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Translating dosage compensation to trisomy 21

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

A modular strategy for engineering orthogonal chimeric RNA transcription regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Versatile RNA-sensing transcriptional regulators for engineering genetic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Affinity chromatography of splicing complexes: U2, U5, and U4 + U6 small nuclear ribonucleoprotein particles in the spliceosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2921

Probing RNA structure by lead cleavage

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25565030

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.2921

1 reference

2 September 2017

1 reference