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The control of mRNA decapping and P-body formation.
scientific article published on December 2008
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2630519
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18 January 2020
review article
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Europe PubMed Central
title
The control of mRNA decapping and P-body formation
(English)
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Europe PubMed Central
PMC publication ID
2630519
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
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18 January 2020
author
Jens Lykke-Andersen
series ordinal
2
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Europe PubMed Central
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2630519
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
author name string
Tobias M Franks
series ordinal
1
1 reference
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Europe PubMed Central
PMC publication ID
2630519
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
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18 January 2020
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English
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publication date
1 December 2008
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18 January 2020
published in
Molecular Cell
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Europe PubMed Central
PMC publication ID
2630519
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18 January 2020
volume
32
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Europe PubMed Central
PMC publication ID
2630519
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
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18 January 2020
issue
5
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Europe PubMed Central
PMC publication ID
2630519
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18 January 2020
page(s)
605-615
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Europe PubMed Central
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2630519
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18 January 2020
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Disruption of GW bodies impairs mammalian RNA interference
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Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover
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29 September 2017
General translational repression by activators of mRNA decapping
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29 September 2017
A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing
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Stress granules and processing bodies are dynamically linked sites of mRNP remodeling
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MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
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Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
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29 September 2017
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The yeast EDC1 mRNA undergoes deadenylation-independent decapping stimulated by Not2p, Not4p, and Not5p
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Processing bodies require RNA for assembly and contain nontranslating mRNAs
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Stress granule assembly is mediated by prion-like aggregation of TIA-1
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29 September 2017
'Cap-tabolism'.
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29 September 2017
Targeted mRNA degradation by deadenylation-independent decapping.
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29 September 2017
Regulation of local mRNA translation
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29 September 2017
Cytoplasmic foci are sites of mRNA decay in human cells
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29 September 2017
Xenopus U8 snoRNA binding protein is a conserved nuclear decapping enzyme
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29 September 2017
Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae
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29 September 2017
The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Crystal structure of Dcp1p and its functional implications in mRNA decapping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
The GW182 protein colocalizes with mRNA degradation associated proteins hDcp1 and hLSm4 in cytoplasmic GW bodies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Functional characterization of the mammalian mRNA decapping enzyme hDcp2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
East of EDEN was a poly(A) tail
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
The RasGAP-associated endoribonuclease G3BP assembles stress granules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate the activity of the decapping enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Analysis of recombinant yeast decapping enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
The hDcp2 protein is a mammalian mRNA decapping enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Functional link between the mammalian exosome and mRNA decapping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The mechanism and regulation of deadenylation: identification and characterization of Xenopus PARN
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The mRNA cap structure stimulates rate of poly(A) removal and amplifies processivity of degradation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
A novel mRNA-decapping activity in HeLa cytoplasmic extracts is regulated by AU-rich elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Yeast Sm-like proteins function in mRNA decapping and decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
A Sm-like protein complex that participates in mRNA degradation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Cap-dependent deadenylation of mRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Circularization of mRNA by eukaryotic translation initiation factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
An essential component of the decapping enzyme required for normal rates of mRNA turnover
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Unconventional processing of the 3' termini of the Epstein-Barr virus DNA polymerase mRNA.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Premature translational termination triggers mRNA decapping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
29 September 2017
The coat protein of the yeast double-stranded RNA virus L-A attaches covalently to the cap structure of eukaryotic mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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29 September 2017
Transcript-specific decapping and regulated stability by the human Dcp2 decapping protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
27 June 2018
P-body formation is a consequence, not the cause, of RNA-mediated gene silencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
27 June 2018
Dcp2 Decaps m2,2,7GpppN-capped RNAs, and its activity is sequence and context dependent
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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27 June 2018
Control of translation initiation in animals.
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stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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27 June 2018
Isolation and characterization of Dcp1p, the yeast mRNA decapping enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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27 June 2018
Drosophila processing bodies in oogenesis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 September 2018
The developmental timing regulator AIN-1 interacts with miRISCs and may target the argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 September 2018
The structural basis of recognition and removal of cellular mRNA 7-methyl G 'caps' by a viral capsid protein: a unique viral response to host defense
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stated in
PubMed Central
reference URL
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4 September 2018
Uridine addition after microRNA-directed cleavage
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stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 September 2018
Me31B silences translation of oocyte-localizing RNAs through the formation of cytoplasmic RNP complex during Drosophila oogenesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 September 2018
cgh-1, a conserved predicted RNA helicase required for gametogenesis and protection from physiological germline apoptosis in C. elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
retrieved
4 September 2018
Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 September 2018
Analysis of mutations in the yeast mRNA decapping enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 September 2018
Identification of PatL1, a human homolog to yeast P body component Pat1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2630519
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4 December 2018
Differential effects of translational inhibition in cis and in trans on the decay of the unstable yeast MFA2 mRNA
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/19061636
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Decapping reaction of mRNA requires Dcp1 in fission yeast: its characterization in different species from yeast to human
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19061636
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19061636
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.MOLCEL.2008.11.001
1 reference
stated in
Europe PubMed Central
PMC publication ID
2630519
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
PMC publication ID
2630519
1 reference
stated in
Europe PubMed Central
PMC publication ID
2630519
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
PubMed publication ID
19061636
1 reference
stated in
Europe PubMed Central
PMC publication ID
2630519
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19061636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
ResearchGate publication ID
23628703
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