(Q37036333)

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2 March 2020

title

Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast (English)

1 reference

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2 March 2020

7

1 reference

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2 March 2020

Richard J. Maraia

8

1 reference

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2 March 2020

author name string

Tek N Lamichhane

1

1 reference

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2 March 2020

Nathan H Blewett

2

1 reference

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2 March 2020

Amanda K Crawford

3

1 reference

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2 March 2020

Vera A Cherkasova

4

1 reference

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2 March 2020

James R Iben

5

1 reference

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2 March 2020

Thomas J Begley

6

1 reference

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2 March 2020

language of work or name

English

0 references

publication date

28 May 2013

1 reference

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Molecular and Cellular Biology

2 March 2020

published in

1 reference

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2 March 2020

volume

33

1 reference

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2 March 2020

issue

15

1 reference

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2 March 2020

page(s)

2918-2929

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A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

2 March 2020

cites work

1 reference

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Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

29 September 2017

1 reference

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Psk1, an AGC kinase family member in fission yeast, is directly phosphorylated and controlled by TORC1 and functions as S6 kinase

29 September 2017

1 reference

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Translational control of cell division by Elongator

29 September 2017

1 reference

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Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins

29 September 2017

1 reference

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tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon:codon wobble pair in a eukaryote

29 September 2017

1 reference

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Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection

29 September 2017

1 reference

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Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p

29 September 2017

1 reference

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Nutrient limitations alter cell division control and chromosome segregation through growth-related kinases and phosphatases

29 September 2017

1 reference

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Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases

29 September 2017

1 reference

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Deficit of tRNA(Lys) modification by Cdkal1 causes the development of type 2 diabetes in mice

29 September 2017

1 reference

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29 September 2017

1 reference

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Cellular mechanisms that control mistranslation

29 September 2017

1 reference

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tRNA biology charges to the front

29 September 2017

1 reference

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A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae.

29 September 2017

1 reference

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Structural aspects of messenger RNA reading frame maintenance by the ribosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Fission yeast TORC1 regulates phosphorylation of ribosomal S6 proteins in response to nutrients and its activity is inhibited by rapamycin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Our paths might cross: the role of the fungal cell wall integrity pathway in stress response and cross talk with other stress response pathways

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

AmiGO: online access to ontology and annotation data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Locating proteins in the cell using TargetP, SignalP and related tools

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

N6-isopentenyladenosine: a potential therapeutic agent for a variety of epithelial cancers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

tRNA's wobble decoding of the genome: 40 years of modification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

The frequency of translational misreading errors in E. coli is largely determined by tRNA competition.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Molecular biology: sticky end in protein synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Identification and functional characterization of the candidate tumor suppressor gene TRIT1 in human lung cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Mutations in the RNA polymerase III subunit Rpc11p that decrease RNA 3' cleavage activity increase 3'-terminal oligo(U) length and La-dependent tRNA processing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

The yeast kinase Swe1 is required for proper entry into cell cycle after arrest due to ribosome biogenesis and protein synthesis defects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Wee1-dependent mechanisms required for coordination of cell growth and cell division

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Regulation of physiological rates in Caenorhabditis elegans by a tRNA-modifying enzyme in the mitochondria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Control of transfer RNA maturation by phosphorylation of the human La antigen on serine 366

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Escherichia coli dimethylallyl diphosphate:tRNA dimethylallyltransferase: essential elements for recognition of tRNA substrates within the anticodon stem-loop

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Saccharomyces cerevisiae Mod5p-II contains sequences antagonistic for nuclear and cytosolic locations.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Rapamycin specifically interferes with the developmental response of fission yeast to starvation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Mutations altering the mitochondrial-cytoplasmic distribution of Mod5p implicate the actin cytoskeleton and mRNA 3' ends and/or protein synthesis in mitochondrial delivery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Synthesis and function of isopentenyl adenosine derivatives in tRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

The methylthio group (ms2) of N6-(4-hydroxyisopentenyl)-2-methylthioadenosine (ms2io6A) present next to the anticodon contributes to the decoding efficiency of the tRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Regulatory genes controlling mitosis in the fission yeast Schizosaccharomyces pombe

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

29 September 2017

Codon selection in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Expression of a preproinsulin-beta-galactosidase gene fusion in mammalian cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

A mutant of yeast apparently defective in the initiation of protein synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Influence of modification next to the anticodon in tRNA on codon context sensitivity of translational suppression and accuracy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Pleiotropic effects induced by modification deficiency next to the anticodon of tRNA from Salmonella typhimurium LT2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

GCD2, a translational repressor of the GCN4 gene, has a general function in the initiation of protein synthesis in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

MOD5 translation initiation sites determine N6-isopentenyladenosine modification of mitochondrial and cytoplasmic tRNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Isopentenyladenosine deficient tRNA from an antisuppressor mutant of Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Trm9-catalyzed tRNA modifications link translation to the DNA damage response

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Transfer RNA recognition by the Escherichia coli delta2-isopentenyl-pyrophosphate:tRNA delta2-isopentenyl transferase: dependence on the anticodon arm structure

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Role modifications in tyrosine transfer RNA: a modified base affecting ribosome binding

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Multiple replacements establish the importance of tyrosine-503 in beta-galactosidase (Escherichia coli).

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

ms2i6A deficiency enhances proofreading in translation

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Regulation of leucine uptake by tor1+ in Schizosaccharomyces pombe is sensitive to rapamycin

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719670

Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding

4 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

TORC1 of fission yeast is rapamycin-sensitive

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Up-regulation of tRNA biosynthesis affects translational readthrough in maf1- Δ mutant of Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

The antisuppressor strain sin1 of Schizosaccharomyces pombe lacks the modification isopentenyladenosine in transfer RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Translational efficiency of transfer RNA's: uses of an extended anticodon

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Independent loci for the structural genes of the yeast mitochondrial alpha and beta ATPase subunits

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Effects of miaA on translation and growth rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Site-directed mutagenesis of beta-galactosidase (E. coli) reveals that tyr-503 is essential for activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

maf1 mutation alters the subcellular localization of the Mod5 protein in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

MitoProt, a Macintosh application for studying mitochondrial proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Reduced misreading of asparagine codons by Escherichia coli tRNALys with hypomodified derivatives of 5-methylaminomethyl-2-thiouridine in the wobble position

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Tyr-503 of beta-galactosidase (Escherichia coli) plays an important role in degalactosylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23716598

12 December 2020

Identifiers

DOI

10.1128/MCB.00278-13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23716598%20AND%20SRC:MED&resulttype=core&format=json

release_knv42ki4nnepbl7wk3bctzxn3m

2 March 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/knv42ki4nnepbl7wk3bctzxn3m

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23716598%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

23716598

1 reference