(Q36218315)

12 August 2017

CTCF-mediated functional chromatin interactome in pluripotent cells (English)

1 reference

Erratum: CTCF-mediated functional chromatin interactome in pluripotent cells

12 August 2017

1 reference

corrigendum / erratum

0 references

Elaine Chew

5

0 references

Guoliang Li

object named as

Guoliang Li

3

0 references

Guillaume Bourque

18

object named as

Guillaume Bourque

1 reference

12 August 2017

17

Atif Shahab

1 reference

12 August 2017

Lusy Handoko

1

1 reference

12 August 2017

Han Xu

2

1 reference

12 August 2017

Chew Yee Ngan

4

1 reference

12 August 2017

Marie Schnapp

6

1 reference

12 August 2017

Charlie Wah Heng Lee

7

1 reference

12 August 2017

Chaopeng Ye

8

1 reference

12 August 2017

Joanne Lim Hui Ping

9

1 reference

12 August 2017

Fabianus Mulawadi

10

1 reference

12 August 2017

Eleanor Wong

11

1 reference

12 August 2017

Jianpeng Sheng

12

1 reference

12 August 2017

Yubo Zhang

13

1 reference

12 August 2017

Thompson Poh

14

1 reference

12 August 2017

Chee Seng Chan

15

1 reference

12 August 2017

Galih Kunarso

16

1 reference

12 August 2017

Valere Cacheux-Rataboul

19

1 reference

12 August 2017

Wing-Kin Sung

20

1 reference

12 August 2017

Yijun Ruan

21

1 reference

12 August 2017

Chia-Lin Wei

22

1 reference

12 August 2017

language of work or name

English

0 references

publication date

19 June 2011

1 reference

12 August 2017

1 reference

12 August 2017

43

1 reference

12 August 2017

7

1 reference

12 August 2017

630-638

1 reference

Mediator and cohesin connect gene expression and chromatin architecture

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

A three-dimensional model of the yeast genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

A signal-noise model for significance analysis of ChIP-seq with negative control

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

A CTCF-independent role for cohesin in tissue-specific transcription

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

An oestrogen-receptor-α-bound human chromatin interactome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

CTCF: master weaver of the genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

CTCF and its protein partners: divide and rule?

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

The emerging role of nuclear architecture in DNA repair and genome maintenance

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

ChIP-seq accurately predicts tissue-specific activity of enhancers

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Genome-scale DNA methylation maps of pluripotent and differentiated cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Cohesins functionally associate with CTCF on mammalian chromosome arms

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Cohesin mediates transcriptional insulation by CCCTC-binding factor

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Stability and flexibility of epigenetic gene regulation in mammalian development

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

High-resolution profiling of histone methylations in the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Analysis of the H19ICR insulator

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Beyond the sequence: cellular organization of genome function

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Zic3 is required for maintenance of pluripotency in embryonic stem cells.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Chromatin in pluripotent embryonic stem cells and differentiation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Chromatin boundaries and chromatin domains.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Self-renewal vs. differentiation of mouse embryonic stem cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

A stem cell molecular signature

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Nuclear compartmentalization and gene activity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

To be or not to be active: the stochastic nature of enhancer action

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436933

BLAT—The BLAST-Like Alignment Tool

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.857

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NG.857

1 reference

12 August 2017

1 reference

12 August 2017

PubMed publication ID

21685913

1 reference