(Q36141647)

12 August 2017

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title

From signatures to models: understanding cancer using microarrays (English)

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12 August 2017

1

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12 August 2017

2

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12 August 2017

4

Aviv Regev

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12 August 2017

5

Daphne Koller

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Daphne Koller

series ordinal

5

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Naftali Kaminski

object named as

Naftali Kaminski

series ordinal

3

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language of work or name

English

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publication date

1 June 2005

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12 August 2017

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12 August 2017

volume

37 Suppl

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12 August 2017

page(s)

S38-45

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describes a project that uses

12 August 2017

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Genome-wide location and function of DNA binding proteins

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https://api.crossref.org/works/10.1038%2FNG1561

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Tissue microarrays for high-throughput molecular profiling of tumor specimens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Expression profiling in cancer using cDNA microarrays

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Genomic medicine. Gene expression tests foretell breast cancer's future

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Forensic genetics and ethical, legal and social implications beyond the clinic

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Gene expression phenotypic models that predict the activity of oncogenic pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Calculating the statistical significance of physical clusters of co-regulated genes in the genome: the role of chromatin in domain-wide gene regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Initiating oncogenic event determines gene-expression patterns of human breast cancer models

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Control of pancreas and liver gene expression by HNF transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

The TRANSFAC system on gene expression regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Sequencing and comparison of yeast species to identify genes and regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Systematic determination of genetic network architecture

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Transcriptional regulatory networks in Saccharomyces cerevisiae

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Identifying regulatory networks by combinatorial analysis of promoter elements

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Transcriptional regulatory code of a eukaryotic genome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Whole-genome discovery of transcription factor binding sites by network-level conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Predicting gene expression from sequence

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Computational discovery of gene modules and regulatory networks

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

A probabilistic method to detect regulatory modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Minreg: inferring an active regulator set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Using Bayesian networks to analyze expression data

21 January 2018

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https://api.crossref.org/works/10.1038%2FNG1561

Inferring quantitative models of regulatory networks from expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Using a quantitative blueprint to reprogram the dynamics of the flagella gene network

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Transformation of follicular lymphoma to diffuse large-cell lymphoma: alternative patterns with increased or decreased expression of c-myc and its regulated genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Gene-expression profiles predict survival of patients with lung adenocarcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Stromal effects on mammary gland development and breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Comparing genomic expression patterns across species identifies shared transcriptional profile in aging

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Dynamics of the p53-Mdm2 feedback loop in individual cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Single cell profiling of potentiated phospho-protein networks in cancer cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

In silico dissection of cell-type-associated patterns of gene expression in prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Expression deconvolution: a reinterpretation of DNA microarray data reveals dynamic changes in cell populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

A DNA-Binding Protein Helps Repair Breaks in DNA Double Helix

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

A multigenic program mediating breast cancer metastasis to bone

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Laser capture microdissection and advanced molecular analysis of human breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Identification of genes whose expression is upregulated in lung adenocarcinoma cells in comparison with type II alveolar cells and bronchiolar epithelial cells in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

NFATc2-mediated repression of cyclin-dependent kinase 4 expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

The Wnt connection to tumorigenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Loss of JunB activity enhances stromelysin 1 expression in a model of the epithelial-to-mesenchymal transition of mouse skin tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

Prediction of central nervous system embryonal tumour outcome based on gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

A gene atlas of the mouse and human protein-encoding transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

CREME: Cis-Regulatory Module Explorer for the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

Transcriptional control in the segmentation gene network of Drosophila

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

Increased measurement accuracy for sequence-verified microarray probes

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

Prediction of cancer outcome with microarrays: a multiple random validation strategy

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

Identification of genes periodically expressed in the human cell cycle and their expression in tumors

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

NFATC2 transcription factor regulates cell cycle progression during lymphocyte activation: evidence of its involvement in the control of cyclin gene expression

1 reference

https://api.crossref.org/works/10.1038%2FNG1561

7 January 2021

Identifiers

DOI

10.1038/NG1561

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12 August 2017

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