(Q35630860)

9 August 2017

title

PoSSuM: a database of similar protein-ligand binding and putative pockets (English)

1 reference

9 August 2017

1 reference

4

Koji Tsuda

1 reference

9 August 2017

Jun-Ichi Ito

1

1 reference

9 August 2017

Yasuo Tabei

series ordinal

2

1 reference

9 August 2017

Kana Shimizu

series ordinal

3

1 reference

9 August 2017

Kentaro Tomii

series ordinal

5

1 reference

9 August 2017

language of work or name

English

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publication date

1 December 2011

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9 August 2017

published in

Nucleic Acids Research

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9 August 2017

volume

40

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9 August 2017

issue

Database issue

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9 August 2017

page(s)

D541-8

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Creative Commons Attribution-NonCommercial 3.0 Unported

9 August 2017

copyright license

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The overlap of small molecule and protein binding sites within families of protein structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Fast screening of protein surfaces using geometric invariant fingerprints.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

The first structure of dipeptidyl-peptidase III provides insight into the catalytic mechanism and mode of substrate binding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Data growth and its impact on the SCOP database: new developments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

The Gene Ontology project in 2008

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

SitesBase: a database for structure-based protein-ligand binding site comparisons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

TM-align: a protein structure alignment algorithm based on the TM-score

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Pocketome via comprehensive identification and classification of ligand binding envelopes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Recognition of functional sites in protein structures.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

PDBSprotEC: a Web-accessible database linking PDB chains to EC numbers via SwissProt

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Neprilysin regulates amyloid Beta peptide levels

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

12 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

PDB-scale analysis of known and putative ligand-binding sites with structural sketches

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Alignment-free ultra-high-throughput comparison of druggable protein-ligand binding sites

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Detection of multiscale pockets on protein surfaces using mathematical morphology.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

High-throughput virtual screening of proteins using GRID molecular interaction fields

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

A new method to detect related function among proteins independent of sequence and fold homology.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245044

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22135290

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR1130

1 reference

9 August 2017

DBLP publication ID

journals/nar/ItoTSTT12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 August 2017

1 reference