(Q35040978)

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22 January 2020

title

Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants (English)

1 reference

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22 January 2020

1 reference

Schizosaccharomyces pombe

object named as

Schizosaccharomyces pombe

1 reference

inferred from title

whole genome sequencing

1 reference

5

1 reference

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22 January 2020

Richard J. Maraia

11

1 reference

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22 January 2020

author name string

James R Iben

1

1 reference

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22 January 2020

Jonathan A Epstein

2

1 reference

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22 January 2020

Mark A Bayfield

3

1 reference

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22 January 2020

Monique W Bruinsma

4

1 reference

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22 January 2020

Dagmar Bacikova

6

1 reference

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22 January 2020

Daniel Ahmad

7

1 reference

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22 January 2020

Denise Rockwell

8

1 reference

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22 January 2020

Ellen L W Kittler

9

1 reference

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22 January 2020

Maria L Zapp

10

1 reference

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22 January 2020

language of work or name

English

0 references

publication date

11 February 2011

1 reference

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22 January 2020

published in

Nucleic Acids Research

1 reference

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22 January 2020

volume

39

1 reference

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22 January 2020

issue

11

1 reference

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22 January 2020

page(s)

4728-4742

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

22 January 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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8 July 2018

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8 July 2018

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Genomic organization of eukaryotic tRNAs

8 July 2018

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Human tRNA-derived small RNAs in the global regulation of RNA silencing

8 July 2018

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Conserved and divergent features of the structure and function of La and La-related proteins (LARPs)

8 July 2018

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The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

8 July 2018

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Centromeric localization of dispersed Pol III genes in fission yeast.

8 July 2018

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Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation

8 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

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Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing

8 July 2018

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Precursor-product discrimination by La protein during tRNA metabolism.

8 July 2018

1 reference

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The gap-filling sequence on the left arm of chromosome 2 in fission yeast Schizosaccharomyces pombe

8 July 2018

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tRNA cleavage is a conserved response to oxidative stress in eukaryotes

8 July 2018

1 reference

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RNA recognition motifs: boring? Not quite

8 July 2018

1 reference

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Visual analysis of the yeast 5S rRNA gene transcriptome: regulation and role of La protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

8 July 2018

1 reference

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RNA chaperones, RNA annealers and RNA helicases

8 July 2018

1 reference

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Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Trm9-catalyzed tRNA modifications link translation to the DNA damage response

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Adaptive expression responses in the Pol-gamma null strain of S. pombe depleted of mitochondrial genome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Conservation of a masked nuclear export activity of La proteins and its effects on tRNA maturation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Tissue-specific differences in human transfer RNA expression

8 July 2018

1 reference

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A "silent" polymorphism in the MDR1 gene changes substrate specificity

8 July 2018

1 reference

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The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications

8 July 2018

1 reference

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Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

tRNAGlu wobble uridine methylation by Trm9 identifies Elongator's key role for zymocin-induced cell death in yeast

8 July 2018

1 reference

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Structural basis for recognition and sequestration of UUU(OH) 3' temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen

8 July 2018

1 reference

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Human La is found at RNA polymerase III-transcribed genes in vivo

8 July 2018

1 reference

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The Kluyveromyces lactis gamma-toxin targets tRNA anticodons.

8 July 2018

1 reference

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RNA chaperone activity of protein components of human Ro RNPs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Silencing near tRNA genes requires nucleolar localization.

8 July 2018

1 reference

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Genome evolution in yeasts

8 July 2018

1 reference

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Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

A La protein requirement for efficient pre-tRNA folding.

8 July 2018

1 reference

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Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

The Bioperl toolkit: Perl modules for the life sciences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Aberrant nuclear trafficking of La protein leads to disordered processing of associated precursor tRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

The genome sequence of Schizosaccharomyces pombe

8 July 2018

1 reference

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La protein and the trafficking of nascent RNA polymerase iii transcripts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Control of transfer RNA maturation by phosphorylation of the human La antigen on serine 366

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Cpc2, a fission yeast homologue of mammalian RACK1 protein, interacts with Ran1 (Pat1) kinase To regulate cell cycle progression and meiotic development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Defects in tRNA processing and nuclear export induce GCN4 translation independently of phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

A role for the yeast La protein in U6 snRNP assembly: evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Interaction between the Cig1 and Cig2 B-type cyclins in the fission yeast cell cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

The conserved 7SK snRNA gene localizes to human chromosome 6 by homolog exclusion probing of somatic cell hybrid RNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Nucleotide sequences in Xenopus 5S DNA required for transcription termination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Replication stress checkpoint signaling controls tRNA gene transcription.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Waste not, want not: a case for tRNA repair

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Mouse and human La proteins differ in kinase substrate activity and activation mechanism for tRNA processing.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

tRNA traffic meets a cell-cycle checkpoint.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Dissecting RNA chaperone activity

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

The La protein in Schizosaccharomyces pombe: a conserved yet dispensable phosphoprotein that functions in tRNA maturation.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Recombination between dispersed serine tRNA genes in Schizosaccharomyces pombe

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Interallelic and intergenic conversion in three serine tRNA genes of Schizosaccharomyces pombe

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113579

Characterization of a UGA-suppressing serine tRNA from Schizosaccharomyces pombe with the help of a new in vitro assay system for eukaryotic suppressor tRNAs

25 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21317186

12 December 2020

Purified RNA polymerase III accurately and efficiently terminates transcription of 5s RNA genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/21317186

12 December 2020

Separate RNA-binding surfaces on the multifunctional La protein mediate distinguishable activities in tRNA maturation

1 reference

https://pubmed.ncbi.nlm.nih.gov/21317186

12 December 2020

It's a mod mod tRNA world

1 reference

https://pubmed.ncbi.nlm.nih.gov/21317186

12 December 2020

tRNA genes in eukaryotic genome organization and reorganization

1 reference

https://pubmed.ncbi.nlm.nih.gov/21317186

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR066

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21317186%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21317186%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

PubMed publication ID

21317186

1 reference