(Q34259484)

1 August 2017

title

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data (English)

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1 August 2017

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Cyriac Kandoth

3

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Andrew Mungall

object named as

Andrew J Mungall

6

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Steven Jones

object named as

Steven J Jones

7

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Elaine Mardis

10

object named as

Elaine R Mardis

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1 August 2017

Ken Chen

1

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1 August 2017

John W Wallis

2

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1 August 2017

Joelle M Kalicki-Veizer

4

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1 August 2017

Karen L Mungall

5

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1 August 2017

Marco A Marra

8

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1 August 2017

Timothy J Ley

9

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1 August 2017

Richard K Wilson

11

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1 August 2017

John N Weinstein

12

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1 August 2017

Li Ding

13

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1 August 2017

language of work or name

English

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publication date

4 May 2012

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1 August 2017

number of pages

2

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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1 August 2017

volume

28

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1 August 2017

issue

14

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1 August 2017

page(s)

1923-1924

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Next-generation transcriptome assembly

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Computational methods for transcriptome annotation and quantification using RNA-seq

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Full-length transcriptome assembly from RNA-Seq data without a reference genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Mapping copy number variation by population-scale genome sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

De novo assembly and analysis of RNA-seq data.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Integrative analysis of the melanoma transcriptome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

Glocal alignment: finding rearrangements during alignment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

BLAT—The BLAST-Like Alignment Tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3389765

10.1093/BIOINFORMATICS/BTS272

6 July 2018

Identifiers

DOI

1 reference

journals/bioinformatics/ChenWKKMMJMLMWWD12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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1 August 2017

1 reference