(Q34157715)

31 July 2017

title

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. (English)

1 reference

31 July 2017

Marco Y Hein

2

0 references

Jürgen Cox

series ordinal

1

object named as

Jürgen Cox

1 reference

31 July 2017

6

Matthias Mann

1 reference

31 July 2017

Christian A Luber

3

1 reference

31 July 2017

Igor Paron

series ordinal

4

1 reference

31 July 2017

Nagarjuna Nagaraj

series ordinal

5

1 reference

31 July 2017

publication date

17 June 2014

1 reference

Molecular & Cellular Proteomics

31 July 2017

published in

1 reference

31 July 2017

volume

13

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31 July 2017

issue

9

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31 July 2017

page(s)

2513-2526

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Identification of a metabolizing enzyme in human kidney by proteomic correlation profiling

31 July 2017

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1 reference

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A proteomic characterization of factors enriched at nascent DNA molecules

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Proteomics-based identification of low-abundance signaling and regulatory protein complexes in native plant tissues

5 July 2018

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Label-free quantitative proteomics of CD133-positive liver cancer stem cells

5 July 2018

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Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age.

5 July 2018

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A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

5 July 2018

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Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma.

5 July 2018

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Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

5 July 2018

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Proteomics pipeline for biomarker discovery of laser capture microdissected breast cancer tissue

5 July 2018

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Hyperplexing: a method for higher-order multiplexed quantitative proteomics provides a map of the dynamic response to rapamycin in yeast

5 July 2018

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SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments

5 July 2018

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Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data

5 July 2018

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Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

5 July 2018

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Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes

5 July 2018

1 reference

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Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

5 July 2018

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Global quantification of mammalian gene expression control

5 July 2018

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Andromeda: a peptide search engine integrated into the MaxQuant environment

5 July 2018

1 reference

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Proteome analysis of erythrocytes lacking AMP-activated protein kinase reveals a role of PAK2 kinase in eryptosis

5 July 2018

1 reference

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Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

5 July 2018

1 reference

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

5 July 2018

1 reference

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How much peptide sequence information is contained in ion trap tandem mass spectra?

5 July 2018

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DAnTE: a statistical tool for quantitative analysis of -omics data.

5 July 2018

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OpenMS - an open-source software framework for mass spectrometry

5 July 2018

1 reference

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A quantitative analysis software tool for mass spectrometry-based proteomics

5 July 2018

1 reference

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An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

5 July 2018

1 reference

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ProtQuant: a tool for the label-free quantification of MudPIT proteomics data

5 July 2018

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SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

5 July 2018

1 reference

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Is proteomics the new genomics?

5 July 2018

1 reference

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Quantitative mass spectrometry in proteomics: a critical review

5 July 2018

1 reference

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A platform for accurate mass and time analyses of mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling

5 July 2018

1 reference

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Difference detection in LC-MS data for protein biomarker discovery

5 July 2018

1 reference

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TOPP--the OpenMS proteomics pipeline

5 July 2018

1 reference

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Differential expression analysis of Escherichia coli proteins using a novel software for relative quantitation of LC-MS/MS data

5 July 2018

1 reference

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PEPPeR, a platform for experimental proteomic pattern recognition.

5 July 2018

1 reference

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Mass spectrometry and protein analysis

5 July 2018

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MapQuant: open-source software for large-scale protein quantification

5 July 2018

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Mass spectrometry-based proteomics turns quantitative

5 July 2018

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MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

5 July 2018

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Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments

5 July 2018

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Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

5 July 2018

1 reference

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Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

5 July 2018

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MSight: an image analysis software for liquid chromatography-mass spectrometry

5 July 2018

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Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry

5 July 2018

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

5 July 2018

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Proteomic characterization of the human centrosome by protein correlation profiling

5 July 2018

1 reference

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Mass spectrometry-based proteomics

5 July 2018

1 reference

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Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

5 July 2018

1 reference

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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

5 July 2018

1 reference

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Significance analysis of microarrays applied to the ionizing radiation response

5 July 2018

1 reference

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

5 July 2018

1 reference

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Direct proteomic quantification of the secretome of activated immune cells.

5 July 2018

1 reference

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Label-free quantitative analysis of the membrane proteome of Bace1 protease knock-out zebrafish brains

28 October 2018

1 reference

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Quantitative proteomic analysis reveals the neuroprotective effects of huperzine A for amyloid beta treated neuroblastoma N2a cells.

28 October 2018

1 reference

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A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics.

28 October 2018

1 reference

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Analysis of the Plasmodium falciparum proteasome using Blue Native PAGE and label-free quantitative mass spectrometry

28 October 2018

1 reference

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Quantitative proteomics of Trypanosoma cruzi during metacyclogenesis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Analysis of seminal plasma from patients with non-obstructive azoospermia and identification of candidate biomarkers of male infertility.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Reorganized PKA-AKAP associations in the failing human heart.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Absolute protein quantification by LC/MS(E) for global analysis of salicylic acid-induced plant protein secretion responses

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

Direct comparison of MS-based label-free and SILAC quantitative proteome profiling strategies in primary retinal Müller cells

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159666

The coming age of complete, accurate, and ubiquitous proteomes

9 December 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24942700

12 December 2020

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

https://pubmed.ncbi.nlm.nih.gov/24942700

12 December 2020

Protein quantification in label-free LC-MS experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/24942700

12 December 2020

Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/24942700

12 December 2020

Identifiers

DOI

10.1074/MCP.M113.031591

1 reference

31 July 2017

1 reference

31 July 2017

1 reference