(Q33957779)

30 July 2017

title

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases (English)

1 reference

30 July 2017

1 reference

5

1 reference

30 July 2017

Maria Krestyaninova

4

0 references

Sabine Dietmann

series ordinal

3

object named as

Sabine Dietmann

1 reference

30 July 2017

Alexey V Antonov

1

1 reference

30 July 2017

Esther E Schmidt

series ordinal

2

1 reference

30 July 2017

language of work or name

English

0 references

publication date

2 June 2010

1 reference

30 July 2017

published in

Nucleic Acids Research

1 reference

30 July 2017

volume

38

1 reference

30 July 2017

issue

Web Server issue

1 reference

30 July 2017

page(s)

W78-83

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

30 July 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

5 July 2018

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5 July 2018

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5 July 2018

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KEGGanim: pathway animations for high-throughput data

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

A systems biology approach for pathway level analysis

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

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5 July 2018

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g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments

5 July 2018

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5 July 2018

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5 July 2018

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Robustness trade-offs and host-microbial symbiosis in the immune system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

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5 July 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Medusa: a simple tool for interaction graph analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Formation of regulatory patterns during signal propagation in a Mammalian cellular network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Ontological analysis of gene expression data: current tools, limitations, and open problems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

GOToolBox: functional analysis of gene datasets based on Gene Ontology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Characterizing gene sets with FuncAssociate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Cytoscape: a software environment for integrated models of biomolecular interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Global functional profiling of gene expression.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

NetAffx: Affymetrix probesets and annotations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

KEGG: Kyoto Encyclopedia of Genes and Genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Novel and highly recurrent chromosomal alterations in Sézary syndrome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

Profiling Gene Expression Using Onto-Express

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896180

BIOREL: The benchmark resource to estimate the relevance of the gene networks

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20519200

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The DICS repository: module-assisted analysis of disease-related gene lists

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20519200

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli

1 reference

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKH108

Identifiers

DOI

10.1093/NAR/GKQ482

1 reference

journals/nar/AntonovSDKH10

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_63thg7mrvzfd3jm3lefqfx4aum

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/63thg7mrvzfd3jm3lefqfx4aum

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2896180

1 reference

30 July 2017

1 reference