(Q33475984)

27 July 2017

title

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression (English)

1 reference

protein-protein interaction

27 July 2017

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3

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27 July 2017

5

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27 July 2017

Stefanie De Bodt

1

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27 July 2017

Sebastian Proost

series ordinal

2

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27 July 2017

Pierre Rouzé

series ordinal

4

1 reference

27 July 2017

language of work or name

English

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publication date

29 June 2009

1 reference

27 July 2017

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27 July 2017

volume

10

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27 July 2017

page(s)

288

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describes a project that uses

27 July 2017

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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28 July 2018

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Unequal evolutionary conservation of human protein interactions in interologous networks

28 July 2018

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28 July 2018

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28 July 2018

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Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED.

28 July 2018

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How complete are current yeast and human protein-interaction networks?

28 July 2018

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28 July 2018

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28 July 2018

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Co-evolution of transcriptional and post-translational cell-cycle regulation

28 July 2018

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Characterization and prediction of protein-protein interactions within and between complexes

28 July 2018

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Different Polycomb group complexes regulate common target genes in Arabidopsis.

28 July 2018

1 reference

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Protein-protein interactions more conserved within species than across species

28 July 2018

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

28 July 2018

1 reference

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28 July 2018

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28 July 2018

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Human protein reference database--2006 update

28 July 2018

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OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Towards a proteome-scale map of the human protein–protein interaction network

28 July 2018

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A human protein-protein interaction network: a resource for annotating the proteome

28 July 2018

1 reference

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Genome-wide identification of potential plant E2F target genes

28 July 2018

1 reference

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Assessing the limits of genomic data integration for predicting protein networks

28 July 2018

1 reference

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Kernel methods for predicting protein-protein interactions

28 July 2018

1 reference

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Confirmation of human protein interaction data by human expression data

28 July 2018

1 reference

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Filtering high-throughput protein-protein interaction data using a combination of genomic features

28 July 2018

1 reference

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Computational verification of protein-protein interactions by orthologous co-expression

28 July 2018

1 reference

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Protein interaction mapping: a Drosophila case study

28 July 2018

1 reference

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Inparanoid: a comprehensive database of eukaryotic orthologs

28 July 2018

1 reference

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Information assessment on predicting protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

A first-draft human protein-interaction map

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Protein interaction networks from yeast to human

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

A map of the interactome network of the metazoan C. elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

NASCArrays: a repository for microarray data generated by NASC's transcriptomics service

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

IntAct: an open source molecular interaction database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

The Database of Interacting Proteins: 2004 update

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

PIE1, an ISWI family gene, is required for FLC activation and floral repression in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Computational methods of analysis of protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Assessing experimentally derived interactions in a small world

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

How reliable are experimental protein-protein interaction data?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Comparative assessment of large-scale data sets of protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Interaction generality, a measurement to assess the reliability of a protein-protein interaction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Functional organization of the yeast proteome by systematic analysis of protein complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Relating whole-genome expression data with protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Protein interaction mapping in C. elegans using proteins involved in vulval development

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Clustering gene expression patterns

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Identification and analysis of the Arabidopsis thaliana BSH gene, a member of the SNF5 gene family

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Reconstruction of human protein interolog network using evolutionary conserved network

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

MINT: the Molecular INTeraction database

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

The Gene Ontology (GO) database and informatics resource

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Summaries of Affymetrix GeneChip probe level data

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719670

Probabilistic model of the human protein-protein interaction network

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19563678

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-10-288

1 reference

Dimensions Publication ID

27 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-288

9 September 2019

1 reference

27 July 2017

1 reference