(Q30367781)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

title

Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

author name string

Yao Chi Chen

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

language of work or name

English

0 references

publication date

14 February 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

volume

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

page(s)

e29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

Predicting DNA-binding amino acid residues from electrostatic stabilization upon mutation to Asp/Glu and evolutionary conservation.

2 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Prediction of RNA binding sites in proteins from amino acid sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Prediction of RNA-binding proteins from primary sequence by a support vector machine approach

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

A graph-theory algorithm for rapid protein side-chain prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: comparison with histidyl-tRNA synthetase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Protein-RNA interactions: a structural analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Sequence complexity of disordered protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Themes in RNA-protein recognition.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

3 June 2018

RNA-protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

MOLMOL: a program for display and analysis of macromolecular structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Satisfying hydrogen bonding potential in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

Statistical analysis of atomic contacts at RNA-protein interfaces

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

Computational analysis of hydrogen bonds in protein–RNA complexes for interaction patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

Prediction of protein-protein interaction sites using patch analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

A neural network method for identification of RNA-interacting residues in protein.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275128

26 November 2018

RNA sets the standard

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN008

Protein-RNA interactions: structural analysis and functional classes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18276647

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein-RNA recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18276647

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Predicting Protein Disorder for N-, C-, and Internal Regions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18276647

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18276647%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

18276647

1 reference