(Q28469315)

http://europepmc.org/abstract/PMC/1994707

17 April 2018

title

Capturing heterogeneity in gene expression studies by surrogate variable analysis (English)

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

1 reference

1

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

John D. Storey

object named as

John D Storey

series ordinal

2

0 references

language of work or name

English

0 references

publication date

1 August 2007

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

published in

PLOS Genetics

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

volume

3

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

issue

9

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http://europepmc.org/abstract/PMC/1994707

17 April 2018

page(s)

1724-1735

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

copyright license

Creative Commons Attribution 4.0 International

start time

28 September 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Principal components analysis corrects for stratification in genome-wide association studies

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Assessing stability of gene selection in microarray data analysis

19 March 2017

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Multiple locus linkage analysis of genomewide expression in yeast

19 March 2017

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A transcriptional profile of aging in the human kidney

19 March 2017

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Statistical significance for genomewide studies

19 March 2017

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

19 March 2017

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Genomic expression programs in the response of yeast cells to environmental changes

19 March 2017

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Cluster analysis and display of genome-wide expression patterns

19 March 2017

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Exploring the metabolic and genetic control of gene expression on a genomic scale

19 March 2017

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Significance analysis of time course microarray experiments

19 March 2017

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The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

19 March 2017

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Genetic analysis of genome-wide variation in human gene expression

7 April 2017

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Genetics of gene expression surveyed in maize, mouse and man

7 April 2017

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Genetic dissection of transcriptional regulation in budding yeast

7 April 2017

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Analysis of variance for gene expression microarray data

7 April 2017

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Singular value decomposition for genome-wide expression data processing and modeling

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

A new approach to intensity-dependent normalization of two-channel microarrays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Genetic interactions between polymorphisms that affect gene expression in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Integrative analysis of the cancer transcriptome

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Molecular classification of familial non-BRCA1/BRCA2 breast cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Fundamental patterns underlying gene expression profiles: simplicity from complexity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses.

29 September 2017

1 reference

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Remarks on Parallel Analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Some comments on instability of false discovery rate estimation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Estimation of false discovery proportion under general dependence

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

A reanalysis of a published Affymetrix GeneChip control dataset

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Gene-Expression Profiles in Hereditary Breast Cancer

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1994707

Correlation between gene expression levels and limitations of the empirical bayes methodology for finding differentially expressed genes

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/17907809

12 December 2020

Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/17907809

12 December 2020

Experimental design for gene expression microarrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/17907809

12 December 2020

Treating expression levels of different genes as a sample in microarray data analysis: is it worth a risk?

1 reference

https://pubmed.ncbi.nlm.nih.gov/17907809

12 December 2020

Molecular heterogeneity of inflammatory breast cancer: a hyperproliferative phenotype

1 reference

https://pubmed.ncbi.nlm.nih.gov/17907809

12 December 2020

10.1371/JOURNAL.PGEN.0030161

Identifiers

DOI

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

OpenCitations bibliographic resource ID

181047

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

http://europepmc.org/abstract/PMC/1994707

17 April 2018

PubMed publication ID

17907809

1 reference