(Q24537785)

22 October 2023

Brian Tjaden

1

Brian

Tjaden

1 reference

22 October 2023

Rini Mukherjee Saxena

2

Rini Mukherjee

Saxena

1 reference

22 October 2023

Sergey Stolyar

3

Sergey

Stolyar

1 reference

22 October 2023

David R Haynor

4

David R

Haynor

1 reference

22 October 2023

Carsten Rosenow

6

Carsten

Rosenow

1 reference

A computational approach to identify genes for functional RNAs in genomic sequences

22 October 2023

language of work or name

English

0 references

publication date

1 September 2002

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published in

Nucleic Acids Research

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volume

30

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issue

17

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page(s)

3732-8

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

A functional update of the Escherichia coli K-12 genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Cluster-Rasch models for microarray gene expression data

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Identification of novel small RNAs using comparative genomics and microarrays

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Operons in Escherichia coli: genomic analyses and predictions

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

EcoGene: a genome sequence database for Escherichia coli K-12.

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

GeneMark.hmm: new solutions for gene finding

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Microbial gene identification using interpolated Markov models

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Improved microbial gene identification with GLIMMER

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Expression monitoring by hybridization to high-density oligonucleotide arrays

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

The complete genome sequence of Escherichia coli K-12

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Large-scale transcriptional activity in chromosomes 21 and 22

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Computational identification of noncoding RNAs in E. coli by comparative genomics

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Novel intergenic repeats of Escherichia coli K-12

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Experimental annotation of the human genome using microarray technology

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

An assessment of gene prediction accuracy in large DNA sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Late-night thoughts on the sequence annotation problem

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Eukaryotic promoter recognition

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Evidence in vivo for autogenous control of the cyclic AMP receptor protein gene (crp) in Escherichia coli by divergent RNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Structure and function of a bacterial mRNA stabilizer: analysis of the 5' untranslated region of ompA mRNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Prediction of transcription terminators in bacterial genomes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

Computational methods for the identification of genes in vertebrate genomic sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

On the total number of genes and their length distribution in complete microbial genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137427

A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/12202758

12 December 2020

Visualizing the competitive recognition of TATA-boxes in vertebrate promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/12202758

12 December 2020

Regulation of intrinsic terminator by translation in Escherichia coli: transcription termination at a distance downstream

1 reference

https://pubmed.ncbi.nlm.nih.gov/12202758

12 December 2020

Genomics annotation. Beyond the first draft

1 reference

https://pubmed.ncbi.nlm.nih.gov/12202758

12 December 2020

Identifiers

DOI

10.1093/NAR/GKF505

1 reference

release_ctq5c246p5bereah4nm56l76lm

Fatcat ID

0 references

1 reference

1 reference

1 reference