(Q21092435)

10.1371/JOURNAL.PGEN.1001114

DOI

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1001114

14 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

14 July 2024

author name string

Michael J. Guertin

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

14 July 2024

John T. Lis

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

14 July 2024

language of work or name

English

0 references

publication date

September 2010

0 references

9 September 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

full work available at URL

14 July 2024

https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1001114&type=printable

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20844575/pdf/?tool=EBI

14 July 2024

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20844575/?tool=EBI

14 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

https://europepmc.org/articles/PMC2936546

14 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

https://europepmc.org/articles/PMC2936546?pdf=render

14 July 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20844575

http://dx.plos.org/10.1371/journal.pgen.1001114

14 July 2024

1 reference

10.1371/JOURNAL.PGEN.1001114

DOI

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1001114

14 July 2024

0 references

6

0 references

issue

9

0 references

page(s)

e1001114

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

9 September 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

19 March 2017

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19 March 2017

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In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster

19 March 2017

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19 March 2017

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

19 March 2017

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Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis

19 March 2017

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Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

19 March 2017

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Coactivator ASC-2 mediates heat shock factor 1-mediated transactivation dependent on heat shock

19 March 2017

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How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers

19 March 2017

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Proteotoxic stress and inducible chaperone networks in neurodegenerative disease and aging

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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12 September 2017

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Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X

12 September 2017

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Defining mechanisms that regulate RNA polymerase II transcription in vivo

12 September 2017

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Mapping accessible chromatin regions using Sono-Seq

12 September 2017

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Hox specificity unique roles for cofactors and collaborators

12 September 2017

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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

12 September 2017

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Unlocking the secrets of the genome

12 September 2017

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

12 September 2017

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Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions

12 September 2017

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ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands

12 September 2017

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Spt6 enhances the elongation rate of RNA polymerase II in vivo

12 September 2017

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Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia

12 September 2017

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Genome-wide profiling of salt fractions maps physical properties of chromatin

12 September 2017

1 reference

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

12 September 2017

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A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

12 September 2017

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Caudal, a key developmental regulator, is a DPE-specific transcriptional factor

12 September 2017

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Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

12 September 2017

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Extensive chromatin fragmentation improves enrichment of protein binding sites in chromatin immunoprecipitation experiments

12 September 2017

1 reference

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

12 September 2017

1 reference

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NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila

12 September 2017

1 reference

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GAGA protein: a multi-faceted transcription factor

12 September 2017

1 reference

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The key to development: interpreting the histone code?

12 September 2017

1 reference

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Transcription Factor and Polymerase Recruitment, Modification, and Movement on dhsp70 In Vivo in the Minutes following Heat Shock

12 September 2017

1 reference

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Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Accessibility of transcriptionally inactive genes is specifically reduced at homeoprotein-DNA binding sites in Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

P-TEFb kinase recruitment and function at heat shock loci

12 September 2017

1 reference

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Phosphorylation of Drosophila heat shock transcription factor

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Histone acetylation facilitates RNA polymerase II transcription of the Drosophila hsp26 gene in chromatin.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Regulation of Drosophila heat shock factor trimerization: global sequence requirements and independence of nuclear localization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Heat shock transcription factors: structure and regulation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

The C-terminal region of Drosophila heat shock factor (HSF) contains a constitutively functional transactivation domain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Fine structure analyses of the Drosophila and Saccharomyces heat shock factor--heat shock element interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Localization of RNA polymerase in polytene chromosomes of Drosophila melanogaster

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Hormonal regulation of the E75 gene in Drosophila: identifying functional regulatory elements through computational and biological analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Mediator, not holoenzyme, is directly recruited to the heat shock promoter by HSF upon heat shock

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Regulation of segmentation and segmental identity by Drosophila homeoproteins: the role of DNA binding in functional activity and specificity.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Patterns of puffing activity in the salivary gland chromosomes of Drosophila. V. Responses to environmental treatments.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Cell lines derived from late embryonic stages of Drosophila melanogaster

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Stress-induced oligomerization and chromosomal relocalization of heat-shock factor

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

DNA sequence requirements for generating paused polymerase at the start of hsp70

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Analysis of drosophila mRNA by in situ hybridization: Sequences transcribed in normal and heat shocked cultured cells

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Varying patterns of protein synthesis in Drosophila during heat shock: implications for regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Tracking rates of transcription and splicing in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

The effects of selection against spurious transcription factor binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001114

Eve and ftz regulate a wide array of genes in blastoderm embryos: the selector homeoproteins directly or indirectly regulate most genes in Drosophila

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

HSF recruitment and loss at most Drosophila heat shock loci is coordinated and depends on proximal promoter sequences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2936546

Stable binding of Drosophila heat shock factor to head-to-head and tail-to-tail repeats of a conserved 5 bp recognition unit

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20844575

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20844575

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1001114

1 reference

1 reference

1 reference

1 reference