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| 1. |
Dimitrov, Daniel: Modelling cell-cell communication using prior knowledge with single-cell and spatially-resolved Omics data / presented by M. Sc. Daniel Boykov Dimitrov ; referees: Prof. Dr. Julio Saez-Rodriguez, Prof. Dr. Dr.… . -
Heidelberg, 10 Jul. 2024. - 1 Online-Ressource (118 Seiten) : Illustrationen, Diagramme
DOI: 10.11588/heidok.00035089
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| 2. |
Dimitrov, Daniel: Modelling cell-cell communication using prior knowledge with single-cell and spatially-resolved Omics data / presented by M. Sc. Daniel Boykov Dimitrov ; referees: Prof. Dr. Julio Saez-Rodriguez, Prof. Dr. Dr.… . -
Heidelberg, [2024?]. - 117 Seiten : Illustrationen, Diagramme
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| 3. |
Ramirez Flores, Ricardo O.: Multi-scale molecular descriptions of human heart failure using single cell, spatial, and bulk transcriptomics / presented by B.Sc. Ricardo Omar Ramirez Flores ; referees: Prof. Dr. Rebecca Wade, Prof. Dr. Julio… . -
Heidelberg, 15 Jun. 2023. - 1 Online-Ressource (147 Seiten) : Illustrationen, Diagramme
DOI: 10.11588/heidok.00033349
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| 4. |
Niarakis, Anna: Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches / Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc E. Gillesp… , 13 February 2024. - 24 S. : Illustrationen
In: Frontiers in immunology, ISSN 1664-3224. 14(2024), Artikel-ID 1282859, Seite 1-24
DOI: 10.3389/fimmu.2023.1282859
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| 5. |
Garrido-Rodriguez, Martin: Integrating knowledge and omics to decipher mechanisms via large-scale models of signaling networks / Martin Garrido-Rodriguez, Katharina Zirngibl, Olga Ivanova, Sebastian Lobentanzer & Julio Saez-Rodri… , 31 May 2022. - 15 S.
In: Molecular systems biology, ISSN 1744-4292. 18(2022), 7, Artikel-ID 11036, Seite 1-15
DOI: 10.15252/msb.202211036
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| 6. |
Valdeolivas, Alberto: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics / Alberto Valdeolivas, Bettina Amberg, Nicolas Giroud, Marion Richardson, Eric J. C. Gálvez, Solveig B… , 10 January 2024. - 16 S. : Illustrationen
In: npj precision oncology, ISSN 2397-768X. 8(2024), 1, Artikel-ID 10, Seite 1-16
DOI: 10.1038/s41698-023-00488-4
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| 7. |
Wijaya, Lukas Surya: A network-based transcriptomic landscape of HepG2 cells uncovering causal gene-cytotoxicity interactions underlying drug-induced liver injury / Lukas S. Wijaya, Attila Gabor, Iris E. Pot, Luca van de Have, Julio Saez-Rodriguez, James L. Stevens… , March 2024. - 17 S. : Illustrationen
In: Toxicological sciences, ISSN 1096-0929. 198(2024), 1 vom: März, Seite 14-30
DOI: 10.1093/toxsci/kfad121
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| 8. |
Fuchs, Stijn: Collaborative effect of Csnk1a1 haploinsufficiency and mutant p53 in Myc induction can promote leukemic transformation / Stijn N.R. Fuchs, Ursula S.A. Stalmann, Inge A.M. Snoeren, Eric Bindels, Stephani Schmitz, Bella Ban… , February 13 2024. - 14 S. : Illustrationen
In: Blood advances, ISSN 2473-9537. 8(2024), 3, Seite 766-779
DOI: 10.1182/bloodadvances.2022008926
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| 9. |
Ghasemi, David R.: Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage / David R. Ghasemi, Konstantin Okonechnikov, Anne Rademacher, Stephan Tirier, Kendra K. Maass, Hanna S… , 08 January 2024. - 20 S.
In: Nature Communications, ISSN 2041-1723. 15(2024), Artikel-ID 269, Seite 1-20
DOI: 10.1038/s41467-023-44117-x
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| 10. |
Maier-Hein, Lena: Metrics reloaded : recommendations for image analysis validation / Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodo… , 12 February 2024. - 18 S.
In: Nature methods, ISSN 1548-7105. 21(2024), 2, Seite 195-212
DOI: 10.1038/s41592-023-02151-z
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| 11. |
Dimitrov, Daniel: Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data / Daniel Dimitrov, Dénes Türei, Martin Garrido-Rodriguez, Paul L. Burmedi, James S. Nagai, Charlotte B… , 09 June 2022. - 13 S.
In: Nature Communications, ISSN 2041-1723. 13(2022), Artikel-ID 3224, Seite 1-13
DOI: 10.1038/s41467-022-30755-0
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| 12. |
Alexandrov, Theodore: Enablers and challenges of spatial omics, a melting pot of technologies / Theodore Alexandrov, Julio Saez‐Rodriguez & Sinem K Saka, Nov 2023. - 16 S. : Illustrationen
In: Molecular systems biology, ISSN 1744-4292. 19(2023), 11 vom: Nov., Artikel-ID e10571, Seite 1-16
DOI: 10.15252/msb.202110571
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| 13. |
Bernardo Faura, Martí: Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis / Marti Bernardo-Faura, Melanie Rinas, Jakob Wirbel, Inna Pertsovskaya, Vicky Pliaka, Dimitris E. Mess… , 16 July 2021. - 16 S.
In: Genome medicine, ISSN 1756-994X. 13(2021), Artikel-ID 117, Seite 1-16
DOI: 10.1186/s13073-021-00925-8
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| 14. |
Gjerga, Enio: PHONEMeS : efficient modeling of signaling networks derived from large-scale mass spectrometry data / Enio Gjerga, Aurelien Dugourd, Luis Tobalina, Abel Sousa, and Julio Saez-Rodriguez, 8 March 2021. - 7 S.
In: Journal of proteome research, ISSN 1535-3907. 20(2021), 4, Seite 2138-2144
DOI: 10.1021/acs.jproteome.0c00958
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| 15. |
Palacio-Escat, Nicolàs: Modeling intra- and intercellular communication in the context of human cancer from high-throughput data / presented by M. Sc. Nicolàs Palacio-Escat ; referees: Prof. Dr. Julio Saez-Rodriguez, Prof. Dr. Ursu… . -
Heidelberg, 16 Nov. 2021. - 1 Online-Ressource (xiv, 67 Seiten) : Illustrationen, Diagramme
DOI: 10.11588/heidok.00030684
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| 16. |
Pérez-Martí, Albert: Reducing lipid bilayer stress by monounsaturated fatty acids protects renal proximal tubules in diabetes / Albert Pérez-Martí, Suresh Ramakrishnan, Jiayi Li, Aurelien Dugourd, Martijn R Molenaar, Luigi R De … , May 12, 2022. - 31 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e74391, Seite 1-31
DOI: 10.7554/eLife.74391
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| 17. |
Kuppe, Christoph: Experimental and computational technologies to dissect the kidney at the single-cell level / Christoph Kuppe, Javier Perales-Paton, Julio Saez-Rodriguez and Rafael Kramann, April 2022. - 10 S.
In: Nephrology, dialysis, transplantation, ISSN 1460-2385. 37(2022), 4, Seite 628-637
DOI: 10.1093/ndt/gfaa233
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| 18. |
Salovska, Barbora: Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities / Barbora Salovska, Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang, Aure… , 13 February 2023. - 25 S.
In: Clinical and translational medicine, ISSN 2001-1326. 13(2023), 2 vom: Feb., Artikel-ID e1179, Seite 1-25
DOI: 10.1002/ctm2.1179
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| 19. |
Ramirez Flores, Ricardo O.: Multi-scale molecular descriptions of human heart failure using single cell, spatial, and bulk transcriptomics / presented by B.Sc. Ricardo Omar Ramirez Flores ; referees: Prof. Dr. Rebecca Wade, Prof. Dr. Julio S… . -
Heidelberg, [2023?]. - 147 Seiten : Illustrationen, Diagramme
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| 20. |
Badia-i-Mompel, Pau: Gene regulatory network inference in the era of single-cell multi-omics / Pau Badia-i-Mompel, Lorna Wessels, Sophia Müller-Dott, Rémi Trimbour, Ricardo O. Ramirez Flores, Ric… , November 2023. - 16 S. : Illustrationen
In: Nature reviews, ISSN 1471-0064. 24(2023), 11 vom: Nov., Seite 739-754
DOI: 10.1038/s41576-023-00618-5
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