sequana / Sequana

SEQUANA ############

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:Python version: 3.6, 3.7.3 (below for now) :Documentation: On readthedocs <http://sequana.readthedocs.org/>_ :Issues: On github <https://github.com/sequana/sequana/issues>_ :How to cite: For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352) <http://www.doi2bib.org/#/doi/10.21105/joss.00352>_

For the **genome coverage** tool (sequana_coverage):  Dimitri Desvillechabrol,
Christiane Bouchier, Sean Kennedy, Thomas Cokelaer
http://biorxiv.org/content/early/2016/12/08/092478

For **Sequanix**: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen,
Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer.
Sequanix: A Dynamic Graphical Interface for Snakemake Workflows 
Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034
Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)

Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.

Please see the documentation <http://sequana.readthedocs.org>_ for an up-to-date status and documentation.