-
Notifications
You must be signed in to change notification settings - Fork 81
/
Copy pathsklearn.datasets.make_biclusters.html
326 lines (291 loc) · 19.1 KB
/
sklearn.datasets.make_biclusters.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">
<meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
<meta property="og:title" content="sklearn.datasets.make_biclusters" />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://scikit-learn/stable/modules/generated/sklearn.datasets.make_biclusters.html" />
<meta property="og:site_name" content="scikit-learn" />
<meta property="og:description" content="Examples using sklearn.datasets.make_biclusters: A demo of the Spectral Co-Clustering algorithm" />
<meta property="og:image" content="https://scikit-learn/stable/_images/sphx_glr_plot_spectral_coclustering_thumb.png" />
<meta property="og:image:alt" content="" />
<meta name="description" content="Examples using sklearn.datasets.make_biclusters: A demo of the Spectral Co-Clustering algorithm" />
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>sklearn.datasets.make_biclusters — scikit-learn 1.3.2 documentation</title>
<link rel="canonical" href="http://scikit-learn.org/stable/modules/generated/sklearn.datasets.make_biclusters.html" />
<link rel="shortcut icon" href="../../_static/favicon.ico"/>
<link rel="stylesheet" href="../../_static/css/vendor/bootstrap.min.css" type="text/css" />
<link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
<link rel="stylesheet" href="../../_static/copybutton.css" type="text/css" />
<link rel="stylesheet" href="../../_static/plot_directive.css" type="text/css" />
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Vibur" type="text/css" />
<link rel="stylesheet" href="../../_static/jupyterlite_sphinx.css" type="text/css" />
<link rel="stylesheet" href="../../_static/sg_gallery.css" type="text/css" />
<link rel="stylesheet" href="../../_static/sg_gallery-binder.css" type="text/css" />
<link rel="stylesheet" href="../../_static/sg_gallery-dataframe.css" type="text/css" />
<link rel="stylesheet" href="../../_static/sg_gallery-rendered-html.css" type="text/css" />
<link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
<script id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
<script src="../../_static/js/vendor/jquery-3.6.3.slim.min.js"></script>
</head>
<body>
<nav id="navbar" class="sk-docs-navbar navbar navbar-expand-md navbar-light bg-light py-0">
<div class="container-fluid sk-docs-container px-0">
<a class="navbar-brand py-0" href="../../index.html">
<img
class="sk-brand-img"
src="../../_static/scikit-learn-logo-small.png"
alt="logo"/>
</a>
<button
id="sk-navbar-toggler"
class="navbar-toggler"
type="button"
data-toggle="collapse"
data-target="#navbarSupportedContent"
aria-controls="navbarSupportedContent"
aria-expanded="false"
aria-label="Toggle navigation"
>
<span class="navbar-toggler-icon"></span>
</button>
<div class="sk-navbar-collapse collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav mr-auto">
<li class="nav-item">
<a class="sk-nav-link nav-link" href="../../install.html">Install</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link" href="../../user_guide.html">User Guide</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link" href="../classes.html">API</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link" href="../../auto_examples/index.html">Examples</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link" target="_blank" rel="noopener noreferrer" href="https://blog.scikit-learn.org/">Community</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../getting_started.html" >Getting Started</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../tutorial/index.html" >Tutorial</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../whats_new/v1.3.html" >What's new</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../glossary.html" >Glossary</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="https://scikit-learn.org/dev/developers/index.html" target="_blank" rel="noopener noreferrer">Development</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../faq.html" >FAQ</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../support.html" >Support</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../related_projects.html" >Related packages</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../roadmap.html" >Roadmap</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../governance.html" >Governance</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="../../about.html" >About us</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="https://github.com/scikit-learn/scikit-learn" >GitHub</a>
</li>
<li class="nav-item">
<a class="sk-nav-link nav-link nav-more-item-mobile-items" href="https://scikit-learn.org/dev/versions.html" >Other Versions and Download</a>
</li>
<li class="nav-item dropdown nav-more-item-dropdown">
<a class="sk-nav-link nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">More</a>
<div class="dropdown-menu" aria-labelledby="navbarDropdown">
<a class="sk-nav-dropdown-item dropdown-item" href="../../getting_started.html" >Getting Started</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../tutorial/index.html" >Tutorial</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../whats_new/v1.3.html" >What's new</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../glossary.html" >Glossary</a>
<a class="sk-nav-dropdown-item dropdown-item" href="https://scikit-learn.org/dev/developers/index.html" target="_blank" rel="noopener noreferrer">Development</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../faq.html" >FAQ</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../support.html" >Support</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../related_projects.html" >Related packages</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../roadmap.html" >Roadmap</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../governance.html" >Governance</a>
<a class="sk-nav-dropdown-item dropdown-item" href="../../about.html" >About us</a>
<a class="sk-nav-dropdown-item dropdown-item" href="https://github.com/scikit-learn/scikit-learn" >GitHub</a>
<a class="sk-nav-dropdown-item dropdown-item" href="https://scikit-learn.org/dev/versions.html" >Other Versions and Download</a>
</div>
</li>
</ul>
<div id="searchbox" role="search">
<div class="searchformwrapper">
<form class="search" action="../../search.html" method="get">
<input class="sk-search-text-input" type="text" name="q" aria-labelledby="searchlabel" />
<input class="sk-search-text-btn" type="submit" value="Go" />
</form>
</div>
</div>
</div>
</div>
</nav>
<div class="d-flex" id="sk-doc-wrapper">
<input type="checkbox" name="sk-toggle-checkbox" id="sk-toggle-checkbox">
<label id="sk-sidemenu-toggle" class="sk-btn-toggle-toc btn sk-btn-primary" for="sk-toggle-checkbox">Toggle Menu</label>
<div id="sk-sidebar-wrapper" class="border-right">
<div class="sk-sidebar-toc-wrapper">
<div class="btn-group w-100 mb-2" role="group" aria-label="rellinks">
<a href="sklearn.datasets.load_wine.html" role="button" class="btn sk-btn-rellink py-1" sk-rellink-tooltip="sklearn.datasets.load_wine">Prev</a><a href="../classes.html" role="button" class="btn sk-btn-rellink py-1" sk-rellink-tooltip="API Reference">Up</a>
<a href="sklearn.datasets.make_blobs.html" role="button" class="btn sk-btn-rellink py-1" sk-rellink-tooltip="sklearn.datasets.make_blobs">Next</a>
</div>
<div class="alert alert-danger p-1 mb-2" role="alert">
<p class="text-center mb-0">
<strong>scikit-learn 1.3.2</strong><br/>
<a href="http://scikit-learn.org/dev/versions.html">Other versions</a>
</p>
</div>
<div class="alert alert-warning p-1 mb-2" role="alert">
<p class="text-center mb-0">
Please <a class="font-weight-bold" href="../../about.html#citing-scikit-learn"><string>cite us</string></a> if you use the software.
</p>
</div>
<div class="sk-sidebar-toc">
<ul>
<li><a class="reference internal" href="#"><code class="xref py py-mod docutils literal notranslate"><span class="pre">sklearn.datasets</span></code>.make_biclusters</a><ul>
<li><a class="reference internal" href="#sklearn.datasets.make_biclusters"><code class="docutils literal notranslate"><span class="pre">make_biclusters</span></code></a></li>
<li><a class="reference internal" href="#examples-using-sklearn-datasets-make-biclusters">Examples using <code class="docutils literal notranslate"><span class="pre">sklearn.datasets.make_biclusters</span></code></a></li>
</ul>
</li>
</ul>
</div>
</div>
</div>
<div id="sk-page-content-wrapper">
<div class="sk-page-content container-fluid body px-md-3" role="main">
<section id="sklearn-datasets-make-biclusters">
<h1><a class="reference internal" href="../classes.html#module-sklearn.datasets" title="sklearn.datasets"><code class="xref py py-mod docutils literal notranslate"><span class="pre">sklearn.datasets</span></code></a>.make_biclusters<a class="headerlink" href="#sklearn-datasets-make-biclusters" title="Permalink to this heading">¶</a></h1>
<dl class="py function">
<dt class="sig sig-object py" id="sklearn.datasets.make_biclusters">
<span class="sig-prename descclassname"><span class="pre">sklearn.datasets.</span></span><span class="sig-name descname"><span class="pre">make_biclusters</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_clusters</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">noise</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">minval</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">maxval</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shuffle</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">random_state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/scikit-learn/scikit-learn/blob/3f89022fa/sklearn/datasets/_samples_generator.py#L1892"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#sklearn.datasets.make_biclusters" title="Permalink to this definition">¶</a></dt>
<dd><p>Generate a constant block diagonal structure array for biclustering.</p>
<p>Read more in the <a class="reference internal" href="../../datasets/sample_generators.html#sample-generators"><span class="std std-ref">User Guide</span></a>.</p>
<dl class="field-list">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><dl class="simple">
<dt><strong>shape</strong><span class="classifier">tuple of shape (n_rows, n_cols)</span></dt><dd><p>The shape of the result.</p>
</dd>
<dt><strong>n_clusters</strong><span class="classifier">int</span></dt><dd><p>The number of biclusters.</p>
</dd>
<dt><strong>noise</strong><span class="classifier">float, default=0.0</span></dt><dd><p>The standard deviation of the gaussian noise.</p>
</dd>
<dt><strong>minval</strong><span class="classifier">float, default=10</span></dt><dd><p>Minimum value of a bicluster.</p>
</dd>
<dt><strong>maxval</strong><span class="classifier">float, default=100</span></dt><dd><p>Maximum value of a bicluster.</p>
</dd>
<dt><strong>shuffle</strong><span class="classifier">bool, default=True</span></dt><dd><p>Shuffle the samples.</p>
</dd>
<dt><strong>random_state</strong><span class="classifier">int, RandomState instance or None, default=None</span></dt><dd><p>Determines random number generation for dataset creation. Pass an int
for reproducible output across multiple function calls.
See <a class="reference internal" href="../../glossary.html#term-random_state"><span class="xref std std-term">Glossary</span></a>.</p>
</dd>
</dl>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><dl>
<dt><strong>X</strong><span class="classifier">ndarray of shape <code class="docutils literal notranslate"><span class="pre">shape</span></code></span></dt><dd><p>The generated array.</p>
</dd>
<dt><strong>rows</strong><span class="classifier">ndarray of shape (n_clusters, X.shape[0])</span></dt><dd><p>The indicators for cluster membership of each row.</p>
</dd>
<dt><strong>cols</strong><span class="classifier">ndarray of shape (n_clusters, X.shape[1])</span></dt><dd><p>The indicators for cluster membership of each column.</p>
</dd>
</dl>
</dd>
</dl>
<div class="admonition seealso">
<p class="admonition-title">See also</p>
<dl class="simple">
<dt><a class="reference internal" href="sklearn.datasets.make_checkerboard.html#sklearn.datasets.make_checkerboard" title="sklearn.datasets.make_checkerboard"><code class="xref py py-obj docutils literal notranslate"><span class="pre">make_checkerboard</span></code></a></dt><dd><p>Generate an array with block checkerboard structure for biclustering.</p>
</dd>
</dl>
</div>
<p class="rubric">References</p>
<div role="list" class="citation-list">
<div class="citation" id="r62875345314c-1" role="doc-biblioentry">
<span class="label"><span class="fn-bracket">[</span>1<span class="fn-bracket">]</span></span>
<p>Dhillon, I. S. (2001, August). Co-clustering documents and
words using bipartite spectral graph partitioning. In Proceedings
of the seventh ACM SIGKDD international conference on Knowledge
discovery and data mining (pp. 269-274). ACM.</p>
</div>
</div>
</dd></dl>
<section id="examples-using-sklearn-datasets-make-biclusters">
<h2>Examples using <code class="docutils literal notranslate"><span class="pre">sklearn.datasets.make_biclusters</span></code><a class="headerlink" href="#examples-using-sklearn-datasets-make-biclusters" title="Permalink to this heading">¶</a></h2>
<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to generate a dataset and bicluster it using the Spectral Co-Clus..."><img alt="" src="../../_images/sphx_glr_plot_spectral_coclustering_thumb.png" />
<p><a class="reference internal" href="../../auto_examples/bicluster/plot_spectral_coclustering.html#sphx-glr-auto-examples-bicluster-plot-spectral-coclustering-py"><span class="std std-ref">A demo of the Spectral Co-Clustering algorithm</span></a></p>
<div class="sphx-glr-thumbnail-title">A demo of the Spectral Co-Clustering algorithm</div>
</div></div><div class="clearer"></div></section>
</section>
</div>
<div class="container">
<footer class="sk-content-footer">
© 2007 - 2023, scikit-learn developers (BSD License).
<a href="../../_sources/modules/generated/sklearn.datasets.make_biclusters.rst.txt" rel="nofollow">Show this page source</a>
</footer>
</div>
</div>
</div>
<script src="../../_static/js/vendor/bootstrap.min.js"></script>
<script>
window.ga=window.ga||function(){(ga.q=ga.q||[]).push(arguments)};ga.l=+new Date;
ga('create', 'UA-22606712-2', 'auto');
ga('set', 'anonymizeIp', true);
ga('send', 'pageview');
</script>
<script async src='https://www.google-analytics.com/analytics.js'></script>
<script defer data-domain="scikit-learn.org" src="https://views.scientific-python.org/js/script.js">
</script>
<script src="../../_static/clipboard.min.js"></script>
<script src="../../_static/copybutton.js"></script>
<script>
$(document).ready(function() {
/* Add a [>>>] button on the top-right corner of code samples to hide
* the >>> and ... prompts and the output and thus make the code
* copyable. */
var div = $('.highlight-python .highlight,' +
'.highlight-python3 .highlight,' +
'.highlight-pycon .highlight,' +
'.highlight-default .highlight')
var pre = div.find('pre');
// get the styles from the current theme
pre.parent().parent().css('position', 'relative');
// create and add the button to all the code blocks that contain >>>
div.each(function(index) {
var jthis = $(this);
// tracebacks (.gt) contain bare text elements that need to be
// wrapped in a span to work with .nextUntil() (see later)
jthis.find('pre:has(.gt)').contents().filter(function() {
return ((this.nodeType == 3) && (this.data.trim().length > 0));
}).wrap('<span>');
});
/*** Add permalink buttons next to glossary terms ***/
$('dl.glossary > dt[id]').append(function() {
return ('<a class="headerlink" href="#' +
this.getAttribute('id') +
'" title="Permalink to this term">¶</a>');
});
});
</script>
<script id="MathJax-script" async src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-chtml.js"></script>
<script src="https://scikit-learn.org/versionwarning.js"></script>
</body>
</html>