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<li><a class="reference internal" href="#">Introducing the <code class="docutils literal notranslate"><span class="pre">set_output</span></code> API</a></li>
</ul>
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<p class="admonition-title">Note</p>
<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-miscellaneous-plot-set-output-py"><span class="std std-ref">here</span></a>
to download the full example code or to run this example in your browser via Binder</p>
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<section class="sphx-glr-example-title" id="introducing-the-set-output-api">
<span id="sphx-glr-auto-examples-miscellaneous-plot-set-output-py"></span><h1>Introducing the <code class="docutils literal notranslate"><span class="pre">set_output</span></code> API<a class="headerlink" href="#introducing-the-set-output-api" title="Permalink to this heading">¶</a></h1>
<p>This example will demonstrate the <code class="docutils literal notranslate"><span class="pre">set_output</span></code> API to configure transformers to
output pandas DataFrames. <code class="docutils literal notranslate"><span class="pre">set_output</span></code> can be configured per estimator by calling
the <code class="docutils literal notranslate"><span class="pre">set_output</span></code> method or globally by setting <code class="docutils literal notranslate"><span class="pre">set_config(transform_output="pandas")</span></code>.
For details, see
<a class="reference external" href="https://scikit-learn-enhancement-proposals.readthedocs.io/en/latest/slep018/proposal.html">SLEP018</a>.</p>
<p>First, we load the iris dataset as a DataFrame to demonstrate the <code class="docutils literal notranslate"><span class="pre">set_output</span></code> API.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">sklearn.datasets</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.datasets.load_iris.html#sklearn.datasets.load_iris" title="sklearn.datasets.load_iris" class="sphx-glr-backref-module-sklearn-datasets sphx-glr-backref-type-py-function"><span class="n">load_iris</span></a>
<span class="kn">from</span> <span class="nn">sklearn.model_selection</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.model_selection.train_test_split.html#sklearn.model_selection.train_test_split" title="sklearn.model_selection.train_test_split" class="sphx-glr-backref-module-sklearn-model_selection sphx-glr-backref-type-py-function"><span class="n">train_test_split</span></a>
<span class="n">X</span><span class="p">,</span> <span class="n">y</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.datasets.load_iris.html#sklearn.datasets.load_iris" title="sklearn.datasets.load_iris" class="sphx-glr-backref-module-sklearn-datasets sphx-glr-backref-type-py-function"><span class="n">load_iris</span></a><span class="p">(</span><span class="n">as_frame</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">return_X_y</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="n">X_train</span><span class="p">,</span> <span class="n">X_test</span><span class="p">,</span> <span class="n">y_train</span><span class="p">,</span> <span class="n">y_test</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.model_selection.train_test_split.html#sklearn.model_selection.train_test_split" title="sklearn.model_selection.train_test_split" class="sphx-glr-backref-module-sklearn-model_selection sphx-glr-backref-type-py-function"><span class="n">train_test_split</span></a><span class="p">(</span><span class="n">X</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">stratify</span><span class="o">=</span><span class="n">y</span><span class="p">,</span> <span class="n">random_state</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
<span class="n">X_train</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>
</div>
<div class="output_subarea output_html rendered_html output_result">
<div>
<style scoped>
.dataframe tbody tr th:only-of-type {
vertical-align: middle;
}
.dataframe tbody tr th {
vertical-align: top;
}
.dataframe thead th {
text-align: right;
}
</style>
<table border="1" class="dataframe">
<thead>
<tr style="text-align: right;">
<th></th>
<th>sepal length (cm)</th>
<th>sepal width (cm)</th>
<th>petal length (cm)</th>
<th>petal width (cm)</th>
</tr>
</thead>
<tbody>
<tr>
<th>60</th>
<td>5.0</td>
<td>2.0</td>
<td>3.5</td>
<td>1.0</td>
</tr>
<tr>
<th>1</th>
<td>4.9</td>
<td>3.0</td>
<td>1.4</td>
<td>0.2</td>
</tr>
<tr>
<th>8</th>
<td>4.4</td>
<td>2.9</td>
<td>1.4</td>
<td>0.2</td>
</tr>
<tr>
<th>93</th>
<td>5.0</td>
<td>2.3</td>
<td>3.3</td>
<td>1.0</td>
</tr>
<tr>
<th>106</th>
<td>4.9</td>
<td>2.5</td>
<td>4.5</td>
<td>1.7</td>
</tr>
</tbody>
</table>
</div>
</div>
<br />
<br /><p>To configure an estimator such as <a class="reference internal" href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler"><code class="xref py py-class docutils literal notranslate"><span class="pre">preprocessing.StandardScaler</span></code></a> to return
DataFrames, call <code class="docutils literal notranslate"><span class="pre">set_output</span></code>. This feature requires pandas to be installed.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">sklearn.preprocessing</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a>
<span class="n">scaler</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a><span class="p">()</span><span class="o">.</span><span class="n">set_output</span><span class="p">(</span><span class="n">transform</span><span class="o">=</span><span class="s2">"pandas"</span><span class="p">)</span>
<span class="n">scaler</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_train</span><span class="p">)</span>
<span class="n">X_test_scaled</span> <span class="o">=</span> <span class="n">scaler</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="n">X_test</span><span class="p">)</span>
<span class="n">X_test_scaled</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>
</div>
<div class="output_subarea output_html rendered_html output_result">
<div>
<style scoped>
.dataframe tbody tr th:only-of-type {
vertical-align: middle;
}
.dataframe tbody tr th {
vertical-align: top;
}
.dataframe thead th {
text-align: right;
}
</style>
<table border="1" class="dataframe">
<thead>
<tr style="text-align: right;">
<th></th>
<th>sepal length (cm)</th>
<th>sepal width (cm)</th>
<th>petal length (cm)</th>
<th>petal width (cm)</th>
</tr>
</thead>
<tbody>
<tr>
<th>39</th>
<td>-0.894264</td>
<td>0.798301</td>
<td>-1.271411</td>
<td>-1.327605</td>
</tr>
<tr>
<th>12</th>
<td>-1.244466</td>
<td>-0.086944</td>
<td>-1.327407</td>
<td>-1.459074</td>
</tr>
<tr>
<th>48</th>
<td>-0.660797</td>
<td>1.462234</td>
<td>-1.271411</td>
<td>-1.327605</td>
</tr>
<tr>
<th>23</th>
<td>-0.894264</td>
<td>0.576989</td>
<td>-1.159419</td>
<td>-0.933197</td>
</tr>
<tr>
<th>81</th>
<td>-0.427329</td>
<td>-1.414810</td>
<td>-0.039497</td>
<td>-0.275851</td>
</tr>
</tbody>
</table>
</div>
</div>
<br />
<br /><p><code class="docutils literal notranslate"><span class="pre">set_output</span></code> can be called after <code class="docutils literal notranslate"><span class="pre">fit</span></code> to configure <code class="docutils literal notranslate"><span class="pre">transform</span></code> after the fact.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">scaler2</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a><span class="p">()</span>
<span class="n">scaler2</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_train</span><span class="p">)</span>
<span class="n">X_test_np</span> <span class="o">=</span> <span class="n">scaler2</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="n">X_test</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Default output type: </span><span class="si">{</span><span class="nb">type</span><span class="p">(</span><span class="n">X_test_np</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
<span class="n">scaler2</span><span class="o">.</span><span class="n">set_output</span><span class="p">(</span><span class="n">transform</span><span class="o">=</span><span class="s2">"pandas"</span><span class="p">)</span>
<span class="n">X_test_df</span> <span class="o">=</span> <span class="n">scaler2</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="n">X_test</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Configured pandas output type: </span><span class="si">{</span><span class="nb">type</span><span class="p">(</span><span class="n">X_test_df</span><span class="p">)</span><span class="o">.</span><span class="vm">__name__</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Default output type: ndarray
Configured pandas output type: DataFrame
</pre></div>
</div>
<p>In a <a class="reference internal" href="../../modules/generated/sklearn.pipeline.Pipeline.html#sklearn.pipeline.Pipeline" title="sklearn.pipeline.Pipeline"><code class="xref py py-class docutils literal notranslate"><span class="pre">pipeline.Pipeline</span></code></a>, <code class="docutils literal notranslate"><span class="pre">set_output</span></code> configures all steps to output
DataFrames.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">sklearn.pipeline</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.pipeline.make_pipeline.html#sklearn.pipeline.make_pipeline" title="sklearn.pipeline.make_pipeline" class="sphx-glr-backref-module-sklearn-pipeline sphx-glr-backref-type-py-function"><span class="n">make_pipeline</span></a>
<span class="kn">from</span> <span class="nn">sklearn.linear_model</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.linear_model.LogisticRegression.html#sklearn.linear_model.LogisticRegression" title="sklearn.linear_model.LogisticRegression" class="sphx-glr-backref-module-sklearn-linear_model sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">LogisticRegression</span></a>
<span class="kn">from</span> <span class="nn">sklearn.feature_selection</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.feature_selection.SelectPercentile.html#sklearn.feature_selection.SelectPercentile" title="sklearn.feature_selection.SelectPercentile" class="sphx-glr-backref-module-sklearn-feature_selection sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">SelectPercentile</span></a>
<span class="n">clf</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.pipeline.make_pipeline.html#sklearn.pipeline.make_pipeline" title="sklearn.pipeline.make_pipeline" class="sphx-glr-backref-module-sklearn-pipeline sphx-glr-backref-type-py-function"><span class="n">make_pipeline</span></a><span class="p">(</span>
<a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a><span class="p">(),</span> <a href="../../modules/generated/sklearn.feature_selection.SelectPercentile.html#sklearn.feature_selection.SelectPercentile" title="sklearn.feature_selection.SelectPercentile" class="sphx-glr-backref-module-sklearn-feature_selection sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">SelectPercentile</span></a><span class="p">(</span><span class="n">percentile</span><span class="o">=</span><span class="mi">75</span><span class="p">),</span> <a href="../../modules/generated/sklearn.linear_model.LogisticRegression.html#sklearn.linear_model.LogisticRegression" title="sklearn.linear_model.LogisticRegression" class="sphx-glr-backref-module-sklearn-linear_model sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">LogisticRegression</span></a><span class="p">()</span>
<span class="p">)</span>
<span class="n">clf</span><span class="o">.</span><span class="n">set_output</span><span class="p">(</span><span class="n">transform</span><span class="o">=</span><span class="s2">"pandas"</span><span class="p">)</span>
<span class="n">clf</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_train</span><span class="p">,</span> <span class="n">y_train</span><span class="p">)</span>
</pre></div>
</div>
<div class="output_subarea output_html rendered_html output_result">
<style>#sk-container-id-45 {color: black;background-color: white;}#sk-container-id-45 pre{padding: 0;}#sk-container-id-45 div.sk-toggleable {background-color: white;}#sk-container-id-45 label.sk-toggleable__label {cursor: pointer;display: block;width: 100%;margin-bottom: 0;padding: 0.3em;box-sizing: border-box;text-align: center;}#sk-container-id-45 label.sk-toggleable__label-arrow:before {content: "▸";float: left;margin-right: 0.25em;color: #696969;}#sk-container-id-45 label.sk-toggleable__label-arrow:hover:before {color: black;}#sk-container-id-45 div.sk-estimator:hover label.sk-toggleable__label-arrow:before {color: black;}#sk-container-id-45 div.sk-toggleable__content {max-height: 0;max-width: 0;overflow: hidden;text-align: left;background-color: #f0f8ff;}#sk-container-id-45 div.sk-toggleable__content pre {margin: 0.2em;color: black;border-radius: 0.25em;background-color: #f0f8ff;}#sk-container-id-45 input.sk-toggleable__control:checked~div.sk-toggleable__content {max-height: 200px;max-width: 100%;overflow: auto;}#sk-container-id-45 input.sk-toggleable__control:checked~label.sk-toggleable__label-arrow:before {content: "▾";}#sk-container-id-45 div.sk-estimator input.sk-toggleable__control:checked~label.sk-toggleable__label {background-color: #d4ebff;}#sk-container-id-45 div.sk-label input.sk-toggleable__control:checked~label.sk-toggleable__label {background-color: #d4ebff;}#sk-container-id-45 input.sk-hidden--visually {border: 0;clip: rect(1px 1px 1px 1px);clip: rect(1px, 1px, 1px, 1px);height: 1px;margin: -1px;overflow: hidden;padding: 0;position: absolute;width: 1px;}#sk-container-id-45 div.sk-estimator {font-family: monospace;background-color: #f0f8ff;border: 1px dotted black;border-radius: 0.25em;box-sizing: border-box;margin-bottom: 0.5em;}#sk-container-id-45 div.sk-estimator:hover {background-color: #d4ebff;}#sk-container-id-45 div.sk-parallel-item::after {content: "";width: 100%;border-bottom: 1px solid gray;flex-grow: 1;}#sk-container-id-45 div.sk-label:hover label.sk-toggleable__label {background-color: #d4ebff;}#sk-container-id-45 div.sk-serial::before {content: "";position: absolute;border-left: 1px solid gray;box-sizing: border-box;top: 0;bottom: 0;left: 50%;z-index: 0;}#sk-container-id-45 div.sk-serial {display: flex;flex-direction: column;align-items: center;background-color: white;padding-right: 0.2em;padding-left: 0.2em;position: relative;}#sk-container-id-45 div.sk-item {position: relative;z-index: 1;}#sk-container-id-45 div.sk-parallel {display: flex;align-items: stretch;justify-content: center;background-color: white;position: relative;}#sk-container-id-45 div.sk-item::before, #sk-container-id-45 div.sk-parallel-item::before {content: "";position: absolute;border-left: 1px solid gray;box-sizing: border-box;top: 0;bottom: 0;left: 50%;z-index: -1;}#sk-container-id-45 div.sk-parallel-item {display: flex;flex-direction: column;z-index: 1;position: relative;background-color: white;}#sk-container-id-45 div.sk-parallel-item:first-child::after {align-self: flex-end;width: 50%;}#sk-container-id-45 div.sk-parallel-item:last-child::after {align-self: flex-start;width: 50%;}#sk-container-id-45 div.sk-parallel-item:only-child::after {width: 0;}#sk-container-id-45 div.sk-dashed-wrapped {border: 1px dashed gray;margin: 0 0.4em 0.5em 0.4em;box-sizing: border-box;padding-bottom: 0.4em;background-color: white;}#sk-container-id-45 div.sk-label label {font-family: monospace;font-weight: bold;display: inline-block;line-height: 1.2em;}#sk-container-id-45 div.sk-label-container {text-align: center;}#sk-container-id-45 div.sk-container {/* jupyter's `normalize.less` sets `[hidden] { display: none; }` but bootstrap.min.css set `[hidden] { display: none !important; }` so we also need the `!important` here to be able to override the default hidden behavior on the sphinx rendered scikit-learn.org. See: https://github.com/scikit-learn/scikit-learn/issues/21755 */display: inline-block !important;position: relative;}#sk-container-id-45 div.sk-text-repr-fallback {display: none;}</style><div id="sk-container-id-45" class="sk-top-container"><div class="sk-text-repr-fallback"><pre>Pipeline(steps=[('standardscaler', StandardScaler()),
('selectpercentile', SelectPercentile(percentile=75)),
('logisticregression', LogisticRegression())])</pre><b>In a Jupyter environment, please rerun this cell to show the HTML representation or trust the notebook. <br />On GitHub, the HTML representation is unable to render, please try loading this page with nbviewer.org.</b></div><div class="sk-container" hidden><div class="sk-item sk-dashed-wrapped"><div class="sk-label-container"><div class="sk-label sk-toggleable"><input class="sk-toggleable__control sk-hidden--visually" id="sk-estimator-id-210" type="checkbox" ><label for="sk-estimator-id-210" class="sk-toggleable__label sk-toggleable__label-arrow">Pipeline</label><div class="sk-toggleable__content"><pre>Pipeline(steps=[('standardscaler', StandardScaler()),
('selectpercentile', SelectPercentile(percentile=75)),
('logisticregression', LogisticRegression())])</pre></div></div></div><div class="sk-serial"><div class="sk-item"><div class="sk-estimator sk-toggleable"><input class="sk-toggleable__control sk-hidden--visually" id="sk-estimator-id-211" type="checkbox" ><label for="sk-estimator-id-211" class="sk-toggleable__label sk-toggleable__label-arrow">StandardScaler</label><div class="sk-toggleable__content"><pre>StandardScaler()</pre></div></div></div><div class="sk-item"><div class="sk-estimator sk-toggleable"><input class="sk-toggleable__control sk-hidden--visually" id="sk-estimator-id-212" type="checkbox" ><label for="sk-estimator-id-212" class="sk-toggleable__label sk-toggleable__label-arrow">SelectPercentile</label><div class="sk-toggleable__content"><pre>SelectPercentile(percentile=75)</pre></div></div></div><div class="sk-item"><div class="sk-estimator sk-toggleable"><input class="sk-toggleable__control sk-hidden--visually" id="sk-estimator-id-213" type="checkbox" ><label for="sk-estimator-id-213" class="sk-toggleable__label sk-toggleable__label-arrow">LogisticRegression</label><div class="sk-toggleable__content"><pre>LogisticRegression()</pre></div></div></div></div></div></div></div>
</div>
<br />
<br /><p>Each transformer in the pipeline is configured to return DataFrames. This
means that the final logistic regression step contains the feature names of the input.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">clf</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">feature_names_in_</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>array(['sepal length (cm)', 'petal length (cm)', 'petal width (cm)'],
dtype=object)
</pre></div>
</div>
<p>Next we load the titanic dataset to demonstrate <code class="docutils literal notranslate"><span class="pre">set_output</span></code> with
<a class="reference internal" href="../../modules/generated/sklearn.compose.ColumnTransformer.html#sklearn.compose.ColumnTransformer" title="sklearn.compose.ColumnTransformer"><code class="xref py py-class docutils literal notranslate"><span class="pre">compose.ColumnTransformer</span></code></a> and heterogenous data.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">sklearn.datasets</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.datasets.fetch_openml.html#sklearn.datasets.fetch_openml" title="sklearn.datasets.fetch_openml" class="sphx-glr-backref-module-sklearn-datasets sphx-glr-backref-type-py-function"><span class="n">fetch_openml</span></a>
<span class="n">X</span><span class="p">,</span> <span class="n">y</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.datasets.fetch_openml.html#sklearn.datasets.fetch_openml" title="sklearn.datasets.fetch_openml" class="sphx-glr-backref-module-sklearn-datasets sphx-glr-backref-type-py-function"><span class="n">fetch_openml</span></a><span class="p">(</span>
<span class="s2">"titanic"</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">as_frame</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">return_X_y</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">parser</span><span class="o">=</span><span class="s2">"pandas"</span>
<span class="p">)</span>
<span class="n">X_train</span><span class="p">,</span> <span class="n">X_test</span><span class="p">,</span> <span class="n">y_train</span><span class="p">,</span> <span class="n">y_test</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.model_selection.train_test_split.html#sklearn.model_selection.train_test_split" title="sklearn.model_selection.train_test_split" class="sphx-glr-backref-module-sklearn-model_selection sphx-glr-backref-type-py-function"><span class="n">train_test_split</span></a><span class="p">(</span><span class="n">X</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">stratify</span><span class="o">=</span><span class="n">y</span><span class="p">)</span>
</pre></div>
</div>
<p>The <code class="docutils literal notranslate"><span class="pre">set_output</span></code> API can be configured globally by using <a class="reference internal" href="../../modules/generated/sklearn.set_config.html#sklearn.set_config" title="sklearn.set_config"><code class="xref py py-func docutils literal notranslate"><span class="pre">set_config</span></code></a> and
setting <code class="docutils literal notranslate"><span class="pre">transform_output</span></code> to <code class="docutils literal notranslate"><span class="pre">"pandas"</span></code>.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">sklearn.compose</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.compose.ColumnTransformer.html#sklearn.compose.ColumnTransformer" title="sklearn.compose.ColumnTransformer" class="sphx-glr-backref-module-sklearn-compose sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">ColumnTransformer</span></a>
<span class="kn">from</span> <span class="nn">sklearn.preprocessing</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.preprocessing.OneHotEncoder.html#sklearn.preprocessing.OneHotEncoder" title="sklearn.preprocessing.OneHotEncoder" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">OneHotEncoder</span></a><span class="p">,</span> <a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a>
<span class="kn">from</span> <span class="nn">sklearn.impute</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.impute.SimpleImputer.html#sklearn.impute.SimpleImputer" title="sklearn.impute.SimpleImputer" class="sphx-glr-backref-module-sklearn-impute sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">SimpleImputer</span></a>
<span class="kn">from</span> <span class="nn">sklearn</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.set_config.html#sklearn.set_config" title="sklearn.set_config" class="sphx-glr-backref-module-sklearn sphx-glr-backref-type-py-function"><span class="n">set_config</span></a>
<a href="../../modules/generated/sklearn.set_config.html#sklearn.set_config" title="sklearn.set_config" class="sphx-glr-backref-module-sklearn sphx-glr-backref-type-py-function"><span class="n">set_config</span></a><span class="p">(</span><span class="n">transform_output</span><span class="o">=</span><span class="s2">"pandas"</span><span class="p">)</span>
<span class="n">num_pipe</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.pipeline.make_pipeline.html#sklearn.pipeline.make_pipeline" title="sklearn.pipeline.make_pipeline" class="sphx-glr-backref-module-sklearn-pipeline sphx-glr-backref-type-py-function"><span class="n">make_pipeline</span></a><span class="p">(</span><a href="../../modules/generated/sklearn.impute.SimpleImputer.html#sklearn.impute.SimpleImputer" title="sklearn.impute.SimpleImputer" class="sphx-glr-backref-module-sklearn-impute sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">SimpleImputer</span></a><span class="p">(),</span> <a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a><span class="p">())</span>
<span class="n">num_cols</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"age"</span><span class="p">,</span> <span class="s2">"fare"</span><span class="p">]</span>
<span class="n">ct</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.compose.ColumnTransformer.html#sklearn.compose.ColumnTransformer" title="sklearn.compose.ColumnTransformer" class="sphx-glr-backref-module-sklearn-compose sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">ColumnTransformer</span></a><span class="p">(</span>
<span class="p">(</span>
<span class="p">(</span><span class="s2">"numerical"</span><span class="p">,</span> <span class="n">num_pipe</span><span class="p">,</span> <span class="n">num_cols</span><span class="p">),</span>
<span class="p">(</span>
<span class="s2">"categorical"</span><span class="p">,</span>
<a href="../../modules/generated/sklearn.preprocessing.OneHotEncoder.html#sklearn.preprocessing.OneHotEncoder" title="sklearn.preprocessing.OneHotEncoder" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">OneHotEncoder</span></a><span class="p">(</span>
<span class="n">sparse_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">drop</span><span class="o">=</span><span class="s2">"if_binary"</span><span class="p">,</span> <span class="n">handle_unknown</span><span class="o">=</span><span class="s2">"ignore"</span>
<span class="p">),</span>
<span class="p">[</span><span class="s2">"embarked"</span><span class="p">,</span> <span class="s2">"sex"</span><span class="p">,</span> <span class="s2">"pclass"</span><span class="p">],</span>
<span class="p">),</span>
<span class="p">),</span>
<span class="n">verbose_feature_names_out</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
<span class="p">)</span>
<span class="n">clf</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.pipeline.make_pipeline.html#sklearn.pipeline.make_pipeline" title="sklearn.pipeline.make_pipeline" class="sphx-glr-backref-module-sklearn-pipeline sphx-glr-backref-type-py-function"><span class="n">make_pipeline</span></a><span class="p">(</span><span class="n">ct</span><span class="p">,</span> <a href="../../modules/generated/sklearn.feature_selection.SelectPercentile.html#sklearn.feature_selection.SelectPercentile" title="sklearn.feature_selection.SelectPercentile" class="sphx-glr-backref-module-sklearn-feature_selection sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">SelectPercentile</span></a><span class="p">(</span><span class="n">percentile</span><span class="o">=</span><span class="mi">50</span><span class="p">),</span> <a href="../../modules/generated/sklearn.linear_model.LogisticRegression.html#sklearn.linear_model.LogisticRegression" title="sklearn.linear_model.LogisticRegression" class="sphx-glr-backref-module-sklearn-linear_model sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">LogisticRegression</span></a><span class="p">())</span>
<span class="n">clf</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_train</span><span class="p">,</span> <span class="n">y_train</span><span class="p">)</span>
<span class="n">clf</span><span class="o">.</span><span class="n">score</span><span class="p">(</span><span class="n">X_test</span><span class="p">,</span> <span class="n">y_test</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>0.7621951219512195
</pre></div>
</div>
<p>With the global configuration, all transformers output DataFrames. This allows us to
easily plot the logistic regression coefficients with the corresponding feature names.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
<span class="n">log_reg</span> <span class="o">=</span> <span class="n">clf</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
<span class="n">coef</span> <span class="o">=</span> <a href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.Series.html#pandas.Series" title="pandas.Series" class="sphx-glr-backref-module-pandas sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">pd</span><span class="o">.</span><span class="n">Series</span></a><span class="p">(</span><span class="n">log_reg</span><span class="o">.</span><span class="n">coef_</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">index</span><span class="o">=</span><span class="n">log_reg</span><span class="o">.</span><span class="n">feature_names_in_</span><span class="p">)</span>
<span class="n">_</span> <span class="o">=</span> <span class="n">coef</span><span class="o">.</span><span class="n">sort_values</span><span class="p">()</span><span class="o">.</span><span class="n">plot</span><span class="o">.</span><span class="n">barh</span><span class="p">()</span>
</pre></div>
</div>
<img src="../../_images/sphx_glr_plot_set_output_001.png" srcset="../../_images/sphx_glr_plot_set_output_001.png" alt="plot set output" class = "sphx-glr-single-img"/><p>This resets <code class="docutils literal notranslate"><span class="pre">transform_output</span></code> to its default value to avoid impacting other
examples when generating the scikit-learn documentation</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><a href="../../modules/generated/sklearn.set_config.html#sklearn.set_config" title="sklearn.set_config" class="sphx-glr-backref-module-sklearn sphx-glr-backref-type-py-function"><span class="n">set_config</span></a><span class="p">(</span><span class="n">transform_output</span><span class="o">=</span><span class="s2">"default"</span><span class="p">)</span>
</pre></div>
</div>
<p>When configuring the output type with <a class="reference internal" href="../../modules/generated/sklearn.config_context.html#sklearn.config_context" title="sklearn.config_context"><code class="xref py py-func docutils literal notranslate"><span class="pre">config_context</span></code></a> the
configuration at the time when <code class="docutils literal notranslate"><span class="pre">transform</span></code> or <code class="docutils literal notranslate"><span class="pre">fit_transform</span></code> are
called is what counts. Setting these only when you construct or fit
the transformer has no effect.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">sklearn</span> <span class="kn">import</span> <a href="../../modules/generated/sklearn.config_context.html#sklearn.config_context" title="sklearn.config_context" class="sphx-glr-backref-module-sklearn sphx-glr-backref-type-py-function"><span class="n">config_context</span></a>
<span class="n">scaler</span> <span class="o">=</span> <a href="../../modules/generated/sklearn.preprocessing.StandardScaler.html#sklearn.preprocessing.StandardScaler" title="sklearn.preprocessing.StandardScaler" class="sphx-glr-backref-module-sklearn-preprocessing sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">StandardScaler</span></a><span class="p">()</span>
<span class="n">scaler</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_train</span><span class="p">[</span><span class="n">num_cols</span><span class="p">])</span>
</pre></div>
</div>
<div class="output_subarea output_html rendered_html output_result">
<style>#sk-container-id-46 {color: black;background-color: white;}#sk-container-id-46 pre{padding: 0;}#sk-container-id-46 div.sk-toggleable {background-color: white;}#sk-container-id-46 label.sk-toggleable__label {cursor: pointer;display: block;width: 100%;margin-bottom: 0;padding: 0.3em;box-sizing: border-box;text-align: center;}#sk-container-id-46 label.sk-toggleable__label-arrow:before {content: "▸";float: left;margin-right: 0.25em;color: #696969;}#sk-container-id-46 label.sk-toggleable__label-arrow:hover:before {color: black;}#sk-container-id-46 div.sk-estimator:hover label.sk-toggleable__label-arrow:before {color: black;}#sk-container-id-46 div.sk-toggleable__content {max-height: 0;max-width: 0;overflow: hidden;text-align: left;background-color: #f0f8ff;}#sk-container-id-46 div.sk-toggleable__content pre {margin: 0.2em;color: black;border-radius: 0.25em;background-color: #f0f8ff;}#sk-container-id-46 input.sk-toggleable__control:checked~div.sk-toggleable__content {max-height: 200px;max-width: 100%;overflow: auto;}#sk-container-id-46 input.sk-toggleable__control:checked~label.sk-toggleable__label-arrow:before {content: "▾";}#sk-container-id-46 div.sk-estimator input.sk-toggleable__control:checked~label.sk-toggleable__label {background-color: #d4ebff;}#sk-container-id-46 div.sk-label input.sk-toggleable__control:checked~label.sk-toggleable__label {background-color: #d4ebff;}#sk-container-id-46 input.sk-hidden--visually {border: 0;clip: rect(1px 1px 1px 1px);clip: rect(1px, 1px, 1px, 1px);height: 1px;margin: -1px;overflow: hidden;padding: 0;position: absolute;width: 1px;}#sk-container-id-46 div.sk-estimator {font-family: monospace;background-color: #f0f8ff;border: 1px dotted black;border-radius: 0.25em;box-sizing: border-box;margin-bottom: 0.5em;}#sk-container-id-46 div.sk-estimator:hover {background-color: #d4ebff;}#sk-container-id-46 div.sk-parallel-item::after {content: "";width: 100%;border-bottom: 1px solid gray;flex-grow: 1;}#sk-container-id-46 div.sk-label:hover label.sk-toggleable__label {background-color: #d4ebff;}#sk-container-id-46 div.sk-serial::before {content: "";position: absolute;border-left: 1px solid gray;box-sizing: border-box;top: 0;bottom: 0;left: 50%;z-index: 0;}#sk-container-id-46 div.sk-serial {display: flex;flex-direction: column;align-items: center;background-color: white;padding-right: 0.2em;padding-left: 0.2em;position: relative;}#sk-container-id-46 div.sk-item {position: relative;z-index: 1;}#sk-container-id-46 div.sk-parallel {display: flex;align-items: stretch;justify-content: center;background-color: white;position: relative;}#sk-container-id-46 div.sk-item::before, #sk-container-id-46 div.sk-parallel-item::before {content: "";position: absolute;border-left: 1px solid gray;box-sizing: border-box;top: 0;bottom: 0;left: 50%;z-index: -1;}#sk-container-id-46 div.sk-parallel-item {display: flex;flex-direction: column;z-index: 1;position: relative;background-color: white;}#sk-container-id-46 div.sk-parallel-item:first-child::after {align-self: flex-end;width: 50%;}#sk-container-id-46 div.sk-parallel-item:last-child::after {align-self: flex-start;width: 50%;}#sk-container-id-46 div.sk-parallel-item:only-child::after {width: 0;}#sk-container-id-46 div.sk-dashed-wrapped {border: 1px dashed gray;margin: 0 0.4em 0.5em 0.4em;box-sizing: border-box;padding-bottom: 0.4em;background-color: white;}#sk-container-id-46 div.sk-label label {font-family: monospace;font-weight: bold;display: inline-block;line-height: 1.2em;}#sk-container-id-46 div.sk-label-container {text-align: center;}#sk-container-id-46 div.sk-container {/* jupyter's `normalize.less` sets `[hidden] { display: none; }` but bootstrap.min.css set `[hidden] { display: none !important; }` so we also need the `!important` here to be able to override the default hidden behavior on the sphinx rendered scikit-learn.org. See: https://github.com/scikit-learn/scikit-learn/issues/21755 */display: inline-block !important;position: relative;}#sk-container-id-46 div.sk-text-repr-fallback {display: none;}</style><div id="sk-container-id-46" class="sk-top-container"><div class="sk-text-repr-fallback"><pre>StandardScaler()</pre><b>In a Jupyter environment, please rerun this cell to show the HTML representation or trust the notebook. <br />On GitHub, the HTML representation is unable to render, please try loading this page with nbviewer.org.</b></div><div class="sk-container" hidden><div class="sk-item"><div class="sk-estimator sk-toggleable"><input class="sk-toggleable__control sk-hidden--visually" id="sk-estimator-id-214" type="checkbox" checked><label for="sk-estimator-id-214" class="sk-toggleable__label sk-toggleable__label-arrow">StandardScaler</label><div class="sk-toggleable__content"><pre>StandardScaler()</pre></div></div></div></div></div>
</div>
<br />
<br /><div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="k">with</span> <a href="../../modules/generated/sklearn.config_context.html#sklearn.config_context" title="sklearn.config_context" class="sphx-glr-backref-module-sklearn sphx-glr-backref-type-py-function"><span class="n">config_context</span></a><span class="p">(</span><span class="n">transform_output</span><span class="o">=</span><span class="s2">"pandas"</span><span class="p">):</span>
<span class="c1"># the output of transform will be a Pandas DataFrame</span>
<span class="n">X_test_scaled</span> <span class="o">=</span> <span class="n">scaler</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="n">X_test</span><span class="p">[</span><span class="n">num_cols</span><span class="p">])</span>
<span class="n">X_test_scaled</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
</pre></div>
</div>
<div class="output_subarea output_html rendered_html output_result">
<div>
<style scoped>
.dataframe tbody tr th:only-of-type {
vertical-align: middle;
}
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vertical-align: top;
}
.dataframe thead th {
text-align: right;
}
</style>
<table border="1" class="dataframe">
<thead>
<tr style="text-align: right;">
<th></th>
<th>age</th>
<th>fare</th>
</tr>
</thead>
<tbody>
<tr>
<th>334</th>
<td>-0.133660</td>
<td>-0.438059</td>
</tr>
<tr>
<th>885</th>
<td>-0.894273</td>
<td>-0.506893</td>
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<tr>
<th>478</th>
<td>-2.000619</td>
<td>0.182778</td>
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<th>671</th>
<td>-0.548540</td>
<td>-0.461032</td>
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<th>817</th>
<td>-0.548540</td>
<td>-0.487001</td>
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<br />
<br /><p>outside of the context manager, the output will be a NumPy array</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">X_test_scaled</span> <span class="o">=</span> <span class="n">scaler</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="n">X_test</span><span class="p">[</span><span class="n">num_cols</span><span class="p">])</span>
<span class="n">X_test_scaled</span><span class="p">[:</span><span class="mi">5</span><span class="p">]</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>array([[-0.13366001, -0.4380594 ],
[-0.89427284, -0.50689261],
[-2.00061876, 0.18277786],
[-0.54853974, -0.46103177],
[-0.54853974, -0.48700054]])
</pre></div>
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