hodcroftlab / covariants Public

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

covariants.org/

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Name		Name	Last commit message	Last commit date
Latest commit History 123 Commits
compare_lineages/input_files/named_clusters		compare_lineages/input_files/named_clusters
country_case_data		country_case_data
figures		figures
travel_data		travel_data
.gitignore		.gitignore
README.md		README.md
S222_acknowledgement_table.tsv		S222_acknowledgement_table.tsv
S439_acknowledgement_table.tsv		S439_acknowledgement_table.tsv
S477_acknowledgement_table.tsv		S477_acknowledgement_table.tsv
S80_acknowledgement_table.tsv		S80_acknowledgement_table.tsv
S98_acknowledgement_table.tsv		S98_acknowledgement_table.tsv
acknowledgement_table.tsv		acknowledgement_table.tsv
clusterDynamics.py		clusterDynamics.py
cluster_by_country.py		cluster_by_country.py
clusters.py		clusters.py
colors_and_countries.py		colors_and_countries.py
compare_S222_S477.py		compare_S222_S477.py
compare_lineages.py		compare_lineages.py
format_tourism.py		format_tourism.py
get_data.sh		get_data.sh
helpers.py		helpers.py
incidence_ratios.py		incidence_ratios.py
logistic_for_multiple_intros.py		logistic_for_multiple_intros.py
networkplot.py		networkplot.py
notes.md		notes.md
paths.py		paths.py
tourism_arrivals.csv		tourism_arrivals.csv
travel_data.py		travel_data.py
travel_volume_figure.py		travel_volume_figure.py
tree_pie_plot.py		tree_pie_plot.py

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cluster_scripts

Scripts to investigate the SUKS cluster