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Commits on Sep 28, 2022

• Create network_example.R

  davemcg

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Commits on Feb 9, 2022

• guess merge

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• update

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Commits on Dec 15, 2021

• Merge branch 'master' of https://github.com/davemcg/scripts

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• little ex on how to get KEGG and GO gene sets

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Commits on Jun 19, 2020

• documentation

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• horrific script which pulls orig bam from SRA and renames to SRR

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Commits on May 17, 2020

• Update exiftools.md

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• Update exiftools.md

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• Update exiftools.md

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• Update exiftools.md

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• Update exiftools.md

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Commits on May 9, 2020

• two commands for exiftools

  davemcg

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Commits on Jun 15, 2017

• Create round_df.R

  davemcg

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Commits on Jan 31, 2017

• tweak spacing

  davemcg

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• spacing update

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Commits on Sep 26, 2016

• nice ggplot theme

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Commits on Jul 16, 2016

• reworked to do a re find replace on filename

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Commits on Jul 11, 2016

• added argument to control which filetypes are moved. Plus also explicitly keeps exif the same.

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Commits on Jul 4, 2016

• Transfers images to folders based on date taken

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Commits on Apr 11, 2016

• plotting commands in R for python fastqc parser

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• uncomented unzip

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• tons of little tweaks results in large overwrite. functions now. outputs a file for each category, with all different fastqc runs together

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Commits on Apr 10, 2016

• pre-alpha script to roll through fastqc files and add filename info to raw data for better R plotting

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Commits on Feb 26, 2016

• little script to annotate exac vcf with a fake sample

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Commits on Dec 21, 2015

• Line wrapping for better readability

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• Fixed bugs. Works now.

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• Fixed some issues in main()

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Commits on Dec 19, 2015

• Deleted extraneous line

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• Fixed some typos

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Commits on Dec 18, 2015

• Runs samtools inside script now. I think

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• Made reference lower case for proper evaluation

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• Rewrite if elif setup to actually work

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• Should identify reference in count

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Commits on Dec 17, 2015

• Takes input from samtools mpileup and returns counts of alleles

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