Table of Contents

May 2008; 18 (5)

LETTERS

  • Copy number variation at the 7q11.23 segmental duplications is a susceptibility factor for the Williams-Beuren syndrome deletion

    • Ivon Cuscó,
    • Roser Corominas,
    • Mònica Bayés,
    • Raquel Flores,
    • Núria Rivera-Brugués,
    • Victoria Campuzano,
    • and Luis A. Pérez-Jurado
    Genome Res. May 2008 18: 683-694; Published in Advance February 21, 2008, doi:10.1101/gr.073197.107

  • Genomic evolution of the placenta using co-option and duplication and divergence

    • Kirstin Knox and
    • Julie C. Baker
    Genome Res. May 2008 18: 695-705; Published in Advance March 13, 2008, doi:10.1101/gr.071407.107

  • A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility

    • Mark P. Keller,
    • YounJeong Choi,
    • Ping Wang,
    • Dawn Belt Davis,
    • Mary E. Rabaglia,
    • Angie T. Oler,
    • Donald S. Stapleton,
    • Carmen Argmann,
    • Kathy L. Schueler,
    • Steve Edwards,
    • H. Adam Steinberg,
    • Elias Chaibub Neto,
    • Robert Kleinhanz,
    • Scott Turner,
    • Marc K. Hellerstein,
    • Eric E. Schadt,
    • Brian S. Yandell,
    • Christina Kendziorski,
    • and Alan D. Attie
    Genome Res. May 2008 18: 706-716; Published in Advance March 17, 2008, doi:10.1101/gr.074914.107

  • Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

    • David A. Ray,
    • Cedric Feschotte,
    • Heidi J.T. Pagan,
    • Jeremy D. Smith,
    • Ellen J. Pritham,
    • Peter Arensburger,
    • Peter W. Atkinson,
    • and Nancy L. Craig
    Genome Res. May 2008 18: 717-728; Published in Advance March 13, 2008, doi:10.1101/gr.071886.107

  • Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis

    • Timothy P. Stinear,
    • Torsten Seemann,
    • Paul F. Harrison,
    • Grant A. Jenkin,
    • John K. Davies,
    • Paul D.R. Johnson,
    • Zahra Abdellah,
    • Claire Arrowsmith,
    • Tracey Chillingworth,
    • Carol Churcher,
    • Kay Clarke,
    • Ann Cronin,
    • Paul Davis,
    • Ian Goodhead,
    • Nancy Holroyd,
    • Kay Jagels,
    • Angela Lord,
    • Sharon Moule,
    • Karen Mungall,
    • Halina Norbertczak,
    • Michael A. Quail,
    • Ester Rabbinowitsch,
    • Danielle Walker,
    • Brian White,
    • Sally Whitehead,
    • Pamela L.C. Small,
    • Roland Brosch,
    • Lalita Ramakrishnan,
    • Michael A. Fischbach,
    • Julian Parkhill,
    • and Stewart T. Cole
    Genome Res. May 2008 18: 729-741; Published in Advance April 10, 2008, doi:10.1101/gr.075069.107
    OPEN ACCESS ARTICLE

  • Rapid comparative genomic analysis for clinical microbiology: The Francisella tularensis paradigm

    • Bernard La Scola,
    • Khalid Elkarkouri,
    • Wenjun Li,
    • Tara Wahab,
    • Ghislain Fournous,
    • Jean-Marc Rolain,
    • Silpak Biswas,
    • Michel Drancourt,
    • Catherine Robert,
    • Stéphane Audic,
    • Sven Löfdahl,
    • and Didier Raoult
    Genome Res. May 2008 18: 742-750; Published in Advance April 11, 2008, doi:10.1101/gr.071266.107

Methods

  • Scanning the human genome at kilobase resolution

    • Jun Chen,
    • Yeong C. Kim,
    • Yong-Chul Jung,
    • Zhenyu Xuan,
    • Geoff Dworkin,
    • Yanming Zhang,
    • Michael Q. Zhang,
    • and San Ming Wang
    Genome Res. May 2008 18: 751-762; Published in Advance February 21, 2008, doi:10.1101/gr.068304.107

  • Quality scores and SNP detection in sequencing-by-synthesis systems

    • William Brockman,
    • Pablo Alvarez,
    • Sarah Young,
    • Manuel Garber,
    • Georgia Giannoukos,
    • William L. Lee,
    • Carsten Russ,
    • Eric S. Lander,
    • Chad Nusbaum,
    • and David B. Jaffe
    Genome Res. May 2008 18: 763-770; Published in Advance January 22, 2008, doi:10.1101/gr.070227.107

  • SNP-specific array-based allele-specific expression analysis

    • Hans T. Bjornsson,
    • Thomas J. Albert,
    • Christine M. Ladd-Acosta,
    • Roland D. Green,
    • Michael A. Rongione,
    • Christina M. Middle,
    • Rafael A. Irizarry,
    • Karl W. Broman,
    • and Andrew P. Feinberg
    Genome Res. May 2008 18: 771-779; Published in Advance March 27, 2008, doi:10.1101/gr.073254.107

  • Comprehensive high-throughput arrays for relative methylation (CHARM)

    • Rafael A. Irizarry,
    • Christine Ladd-Acosta,
    • Benilton Carvalho,
    • Hao Wu,
    • Sheri A. Brandenburg,
    • Jeffrey A. Jeddeloh,
    • Bo Wen,
    • and Andrew P. Feinberg
    Genome Res. May 2008 18: 780-790; Published in Advance March 3, 2008, doi:10.1101/gr.7301508
    OPEN ACCESS ARTICLE

  • Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines

    • Yih-Jyh Shann,
    • Ching Cheng,
    • Chun-Hui Chiao,
    • Dow-Tien Chen,
    • Pei-Hsin Li,
    • and Ming-Ta Hsu
    Genome Res. May 2008 18: 791-801; Published in Advance February 6, 2008, doi:10.1101/gr.070961.107

RESOURCES

  • De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

    • David Hernandez,
    • Patrice François,
    • Laurent Farinelli,
    • Magne Østerås,
    • and Jacques Schrenzel
    Genome Res. May 2008 18: 802-809; Published in Advance March 10, 2008, doi:10.1101/gr.072033.107

  • ALLPATHS: De novo assembly of whole-genome shotgun microreads

    • Jonathan Butler,
    • Iain MacCallum,
    • Michael Kleber,
    • Ilya A. Shlyakhter,
    • Matthew K. Belmonte,
    • Eric S. Lander,
    • Chad Nusbaum,
    • and David B. Jaffe
    Genome Res. May 2008 18: 810-820; Published in Advance March 13, 2008, doi:10.1101/gr.7337908

  • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

    • Daniel R. Zerbino and
    • Ewan Birney
    Genome Res. May 2008 18: 821-829; Published in Advance March 18, 2008, doi:10.1101/gr.074492.107

  • New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

    • Tatiana M. Karafet,
    • Fernando L. Mendez,
    • Monica B. Meilerman,
    • Peter A. Underhill,
    • Stephen L. Zegura,
    • and Michael F. Hammer
    Genome Res. May 2008 18: 830-838; Published in Advance April 2, 2008, doi:10.1101/gr.7172008
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This Issue

May 2008; 18 (5)
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  1. LETTERS
  2. Methods
  3. RESOURCES

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