panp

Presence-Absence Calls from Negative Strand Matching Probesets

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

Author	Peter Warren
Maintainer	Peter Warren

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("panp")

Documentation

Package Downloads

gene presence/absence calls

Reference Manual

Package source	panp_1.12.0.tar.gz
Windows binary	panp_1.12.0.zip
MacOS X 10.4 (Tiger) binary	panp_1.12.0.tgz
MacOS X 10.5 (Leopard) binary	panp_1.12.0.tgz
Package Downloads Report	Downloads Stats

Details

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Depends	affy , R , Biobase
Imports
Suggests
System Requirements
License	GPL version 2 or newer
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Development History	Bioconductor Changelog